LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu6g1170	ATGGGGAGGGGAAGAGTTGAGCTGAAGAGGATCGAGAACAAGATCAATAGGCAGGTGACGTTCTCGAAGAGAAGGTCTGGTTTGCTCAAGAAAACCCGCGAGATCTCTGTGCTTTGCGATGCCGAAGTCGCTCTCATAGTCTTCTCCACTAAAGGCAAACTTTTCGAGTACTCCACCCAACCTTGTATGGAAAGAATTCTTGAACAGTATGAGAGGTATTCGTATGCGGAGAGGCAGCTTGTTACAAATGATAAAGCACCAAAAGAAAACTGGGTTATAGAGCACGAAAAGCTCAAGGCTAGGCTAGAACTACTACAGCGAAATCAAAGGAATTTTGTGGGAGAAGAGCTGGATAGCTTAAATCTCAAAGGACTTCAAAATTTGGAACAACAACTTGATTCCGCTCTCAAACACATTAGATCACGAAAGAACCAAGCCATGCATGAATCTATTTCAAAGCTTCAGAAAAAGGTGAGTCTTTCTTGCTtgcttgttgttgttgaatatgGTATATAA	516	0.4089	MGRGRVELKRIENKINRQVTFSKRRSGLLKKTREISVLCDAEVALIVFSTKGKLFEYSTQPCMERILEQYERYSYAERQLVTNDKAPKENWVIEHEKLKARLELLQRNQRNFVGEELDSLNLKGLQNLEQQLDSALKHIRSRKNQAMHESISKLQKKVSLSCLLVVVEYGI	171

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu6g1170	171	CDD	MADS_MEF2_like	2	79	IPR033896	GO:0000977\|GO:0045944
	Ssu6g1170	171	Coils	Coil	88	108	-	-
	Ssu6g1170	171	ProSiteProfiles	K-box domain profile.	88	171	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Ssu6g1170	171	Gene3D	-	13	86	IPR036879	GO:0003677\|GO:0046983
	Ssu6g1170	171	PANTHER	AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG	1	157	-	-
	Ssu6g1170	171	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Ssu6g1170	171	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Ssu6g1170	171	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Ssu6g1170	171	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Ssu6g1170	171	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Ssu6g1170	171	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Ssu6g1170	171	Pfam	K-box region	85	158	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Ssu6g1170	171	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Ssu6g1170	171	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	157	-	-
	Ssu6g1170	171	SUPERFAMILY	SRF-like	2	92	IPR036879	GO:0003677\|GO:0046983
	Ssu6g1170	171	Coils	Coil	125	145	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu6g1170	Ssu-Chr6	19059123	19070036	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu6g1170	1	157	MADS-box Gene Family	AT1G26310	71.698	4.74e-80	236

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Ssu6g1170		K-box	6.8e-23	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu6g1170	K09264		-	gmx:100798351	266.544

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu3g0320	3	5872175	5882279	Ssu6g1170	6	19059123	19070036	ECH
	Ssu8g2182	8	57466305	57543524	Ssu6g1170	6	19059123	19070036	ECH
	Ssu6g1170	6	19059123	19070036	Ssu6g1170	6	19059123	19070036	ECH