Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1159 ATGGAGCTTCCTCAAGCGCGTCCCCTTGGAACCGAAGGGAGGAAACCGACGCATGACTTTCTGTCACTCTATAGTAATTCAACTGCCCAACAAGATCCAAGGCCACCTTCTCAAGGAAGTTACCTCAAGACCCATGATTTCTTGCAGCCACTAGAACGGCTAGAAACAAAAGCCAGTGCCAAGGAAGAAGCCACAGATGAAATATCATCGGTGGTTCAAAAGCCACCACCTTCAGTTGAGCACCTCTTACCTGGAGGAATTGGGACTTACAGTATTAGCCACATTtcatatgttaataataatcaaatggTTCCGAAACCAGAGACATCCCTTTTTGTGCGCCAAGCAACTAGTACGGATAGGAATGATGACAACTCCAACTGCAGTTCATATACTTCAAGTGGTTTCACTTTGTGGGAGGAGTCATCGGTGAAGAGAGGAAAGACAGGAAAGGAAAATAATGCGGGCGAGAAACCCACTCTAGGAGAGTCTGCGGTGAAGCTAGGGCAGTGGACATCAACGGAGCGGACGTCACAGTCGTTTTCAAACAATCGTCACGGCAGCTTCAGCTCTCGCTCTTCATCTCAGACAACTGGGCAGAAGAACCAGAGTTTTATTGAAATGATGAAGTCTGCCAGGGATAGTGGCCAGGATGAAGTGCTAGAAAACGAAGAAACATTTTTTCTCAAGAAAGAACCCTCGAATACCCAAAGAGAACTGAGGGTGAAAGTGGATGGGAAGAGTACTGATCAAAAACCAAACACACCAAGATCAAAACACTCTGCCACAGAACAGCGGAGAAGGAGTAAAATTAATGACAGATTCCAAATGCTACGAGAGCTTATTCCACACAGTGACCAAAAGAGGGACAAAGCATCTTTTTTATTAGAGGTCATTGagtatattcattttttacaagAGAAGGTGCATAAGTATGAAGGTTCATTTCAAGGATGGAGTAACGAGCCAGAAAAATTGATGCCATGGaGAAATAATGACAAGCCAGCAGAAAGCTTTCAACCTCGTGGCACCGATAATGGGTCAAGTCCATCTCCAACACTGCTGTTTGCTTCAAAGGTTGACGAGAAAAATATAACCATCTCCCCAACAATTCCTGGGAGTACCCAGAATGTAGAATCTGGCTTGAGCACAGCAACTACCTCCAAGACAATGGATCATCAGGCTGGAATAATGAACAAGGCTTTTCCAATTCCTATTTCTTCACAGCTAAATTTCTTCACTCCAACCCAAATCAGTGGTCCAGGTGGAGTAGTGTCTCAGCTCACCCATAGATCGGCATCTGATGCTGAGAACACCAAATATCAACCTTCTGTTGAATGTCAGACTATGGCTGCTACCAATGAAAAGCTGAAAGAGAAAGAGCTCACTATTGAAGGTGGTGCCATTAGCATATCAAGTGTGTACTCAAAAGGGTTGTTGCATACGCTTACACATGCACTGCAAAGTTCAGGGGTGGATTTGTCACAGGCTAGCATCTCAGTGCAAATTGAACTTGGTAAACAAGCAAACATGAGACCAACTGTACCAGTGTCTATGTGTGGTGGGAAGGATGGTGAAGTTCCTTCTAACAATCAAAAGATGATGCGCTCTAGAGTTTCTAGCTCTGGGAAGTCTGACCAAGCAGTTAAGAAGCTAAAGACGTGCAGAAGTTAA 1674 0.4367 MELPQARPLGTEGRKPTHDFLSLYSNSTAQQDPRPPSQGSYLKTHDFLQPLERLETKASAKEEATDEISSVVQKPPPSVEHLLPGGIGTYSISHISYVNNNQMVPKPETSLFVRQATSTDRNDDNSNCSSYTSSGFTLWEESSVKRGKTGKENNAGEKPTLGESAVKLGQWTSTERTSQSFSNNRHGSFSSRSSSQTTGQKNQSFIEMMKSARDSGQDEVLENEETFFLKKEPSNTQRELRVKVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWSNEPEKLMPWRNNDKPAESFQPRGTDNGSSPSPTLLFASKVDEKNITISPTIPGSTQNVESGLSTATTSKTMDHQAGIMNKAFPIPISSQLNFFTPTQISGPGGVVSQLTHRSASDAENTKYQPSVECQTMAATNEKLKEKELTIEGGAISISSVYSKGLLHTLTHALQSSGVDLSQASISVQIELGKQANMRPTVPVSMCGGKDGEVPSNNQKMMRSRVSSSGKSDQAVKKLKTCRS 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1159 557 MobiDBLite consensus disorder prediction 514 557 - -
Ssu6g1159 557 Pfam Helix-loop-helix DNA-binding domain 257 306 IPR011598 GO:0046983
Ssu6g1159 557 Gene3D - 253 326 IPR036638 GO:0046983
Ssu6g1159 557 MobiDBLite consensus disorder prediction 20 44 - -
Ssu6g1159 557 SMART finulus 261 311 IPR011598 GO:0046983
Ssu6g1159 557 MobiDBLite consensus disorder prediction 1 77 - -
Ssu6g1159 557 MobiDBLite consensus disorder prediction 226 271 - -
Ssu6g1159 557 MobiDBLite consensus disorder prediction 142 202 - -
Ssu6g1159 557 MobiDBLite consensus disorder prediction 330 350 - -
Ssu6g1159 557 CDD bHLH_AtBIM_like 254 330 - -
Ssu6g1159 557 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 554 IPR044295 GO:0003700|GO:0006351|GO:0046983
Ssu6g1159 557 MobiDBLite consensus disorder prediction 166 202 - -
Ssu6g1159 557 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 255 305 IPR011598 GO:0046983
Ssu6g1159 557 MobiDBLite consensus disorder prediction 48 68 - -
Ssu6g1159 557 MobiDBLite consensus disorder prediction 530 548 - -
Ssu6g1159 557 PANTHER TRANSCRIPTION FACTOR BIM1 1 554 - -
Ssu6g1159 557 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 253 326 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1159 Ssu-Chr6 18875085 18884067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1159 1 509 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 47.222 2.86e-124 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu6g1159 HLH 4.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1159 - - gmx:100808016 977.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1159 6 18875085 18884067 Ssu6g1159 6 18875085 18884067 ECH