Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1157 ATGTCGTCGTCGTTGGGTTCCCCAAAGAAGCGGCTGAAATCGCAAGTAGAGGAGAATGAGGAAGAGGGCGTTTGTTGCGGGATTTGCTACGCGGAGCGTGGTGTTTCGATCGTGGGTGAAATCGATTGCTGTAACCACTATTTTTGCTTCGTTTGCATCATGGAATGGGCCAAGCATGAGTCTCGATGCCCAATTTGTCGCCAGAGATTCTCCAACGTTTGCAGGCTCCCTATGCACGGCGTCTTTTCTTCCTCGCGGGACGTTAAGGTCCCTCATCGTGACCAGGTATATCATCCTCATGGAAATGTGGCAACTGGTCCTGTTGATTCTTATGCTGAAGCCAACTGTAGTATCTGTCATGCTGGGACAGAGGAGCATCTTCTACTACTTTGTGATCTTTGTGATACTGCTTCACACACATACTGTGTTGGCCTGGGATATACTGTTCCTGAAGGTGATTGGTTTTGTCATGATTGTGCTATTTCCCGGGAGACCAATACCAATGAAGAATCAGACCAACAAAATGTTTCTCCAGCAGCTGAGCCAAGTGCGACCATCGATATCTTTGATATTGTGAGGGAAACAGGCAGCCGGGTAGTTAAAAGACCAAGGGCATCTCCTTTACAACAGAACCTGTCATCTCCTTCTGTTATTCCTTTATCTGATAGGTTGAGTAGATTCAAAGGAAAAAGTCCTGTCATAGGTGTCCCTCATATGCAGCGTAATATACAGTCACTTCGTGAAAATTGGAATGCTTTGAGAAGTGGTTCATTAAGGTTCTGTGGCAATTCATTTCAACCTGGCAGCATGGTTAGTCAAAAACAAGATTCTAGTTCCTTATCACATTGCAAAGTAGATGATTCACATTCTATGGCTTCCTCAAGCCTTCAACAATCTACTGTCCAAGGTGGTCCTTCTAACAAAATATTGAATGAGAGAGTCTTTAAAGATGTTGACAAGGCTTGGAAAATGATGGACAGGGCAAAGAGGACTCAACTGACTCATCAAAGAACATGCAGCATTCCGGAGGGAGTGGATAAACCCTCATGCAGTGGAGGAGCTAGAAAAACATCATCTGCACATAATAATTTCCTAGAACTGAAAAATCAACATTCGAAAGCATTAGAGTTACGGAACACTAAAAAAGAGAAGCAGTGTGAGTATTCTAGGCTCAACAAGAATATGGAAAATCTCTGGTCTCTGAAGttagaagagaaaaaacaagGTAGGGTTATGCATGAGGAGATGATACAACATGTGAGGGACCATACTACTCATTCAGAAGGATATTGTGAACGTCCATTGTCCAGAAAGGTCCATACTAGTATCCAGGGAGTTCCCTGTCATGAAGATGGAGAGAGAAATGTTGCTGAGGAACAAAGCTCGTCTGCTTGCTTGGCACCTTCAGCAGATTTCGCTTCCTCTCGTGGCAAGTTTGGTAGTGTGTTCTTTAATAGGGATGTGGATCTTGTCAATGAAGAAAAGAGATTGGCTACAAGCTTTAAGGAGGGAAACACAAGAAAAATTGACGATGCAAAAACTGAGATCCAGTCTCTTGTTAAATTGAATCTGAAGCTCTTAActagagataaaaaattagGTGTCGATACCTTCAAGGTTGTGGCAAGGCAGGCCACCCATATCATCTTGGCCGCTTGCAGTTCCGAGCAGCAAAAGTCTAGTATATCCTCGTCTAGCTCAGTATGCAGCCATTCCGACCAAGCTCTTCAGTTTCAGAAATCTACTTTAATGCCTAATTGTTGCAGGCAATGCTTTTATGCCTTTGTAAACAATGTTGTCAATTCCATCAGGTTGGAGAAAGTGGGTTGCGCTTGA 1836 0.4292 MSSSLGSPKKRLKSQVEENEEEGVCCGICYAERGVSIVGEIDCCNHYFCFVCIMEWAKHESRCPICRQRFSNVCRLPMHGVFSSSRDVKVPHRDQVYHPHGNVATGPVDSYAEANCSICHAGTEEHLLLLCDLCDTASHTYCVGLGYTVPEGDWFCHDCAISRETNTNEESDQQNVSPAAEPSATIDIFDIVRETGSRVVKRPRASPLQQNLSSPSVIPLSDRLSRFKGKSPVIGVPHMQRNIQSLRENWNALRSGSLRFCGNSFQPGSMVSQKQDSSSLSHCKVDDSHSMASSSLQQSTVQGGPSNKILNERVFKDVDKAWKMMDRAKRTQLTHQRTCSIPEGVDKPSCSGGARKTSSAHNNFLELKNQHSKALELRNTKKEKQCEYSRLNKNMENLWSLKLEEKKQGRVMHEEMIQHVRDHTTHSEGYCERPLSRKVHTSIQGVPCHEDGERNVAEEQSSSACLAPSADFASSRGKFGSVFFNRDVDLVNEEKRLATSFKEGNTRKIDDAKTEIQSLVKLNLKLLTRDKKLGVDTFKVVARQATHIILAACSSEQQKSSISSSSSVCSHSDQALQFQKSTLMPNCCRQCFYAFVNNVVNSIRLEKVGCA 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1157 611 Pfam PHD-finger 116 160 IPR019787 -
Ssu6g1157 611 SUPERFAMILY RING/U-box 15 73 - -
Ssu6g1157 611 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 184 IPR013083 -
Ssu6g1157 611 PANTHER PHD-FINGER FAMILY PROTEIN 7 611 - -
Ssu6g1157 611 SMART PHD_3 115 160 IPR001965 -
Ssu6g1157 611 Coils Coil 374 394 - -
Ssu6g1157 611 SUPERFAMILY FYVE/PHD zinc finger 109 161 IPR011011 -
Ssu6g1157 611 SMART ring_2 26 66 IPR001841 -
Ssu6g1157 611 Pfam Ring finger domain 26 67 IPR001841 -
Ssu6g1157 611 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 88 IPR013083 -
Ssu6g1157 611 PANTHER HISTONE ACETYLTRANSFERASE 7 611 - -
Ssu6g1157 611 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Ssu6g1157 611 ProSiteProfiles Zinc finger RING-type profile. 26 67 IPR001841 -
Ssu6g1157 611 MobiDBLite consensus disorder prediction 267 307 - -
Ssu6g1157 611 ProSiteProfiles Zinc finger PHD-type profile. 113 162 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1157 Ssu-Chr6 18828661 18832504 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1157 107 163 C2H2 Transcription Factor Family AT3G01460 34.483 1.43e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu6g1157 PHD 1.3e-08 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1157 6 18828661 18832504 Ssu6g1157 6 18828661 18832504 ECH