Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1155 ATGGCAGATGTAACCACTTACCTCCGCCACCACCGCGACCCCGACGACGAGCAAACCCTAATCCCTTTCCCCTATTGGGATTTGGACTTCGATTTCGACCCGGAATTCCCCCCCAACCCGTTCTCGCTCACCGACCGCGAAAACCAGGTCAATTTCGTCATGGATCTCTTCCACCAGCGCGTGGAACAGTCGCAGCTCACCGATCCCCTCTCCAACGACGCCGTTTTCGGCGTCATCGACGGCCTCGGCCTCGACCTCGACCTCGGCTTCCCCCCCGCCGCGGACGACTTCTTCGTCGGACGGAGCCTCTCCGTCGGATCCGACTCCGACGAGGAACACTCGCACGAGGGGAATGACGTTCGCGGGATCTGCGCGCATTCCGATGAAGAAGACTACGCCAACGAAAACGACGACGTTTCGAGCATCCCTCTCTGCTGGGACTCGCTGCAGTTAGAAGACAACAGAGACAACAACTACGAGGATTTCGAGTGGGAGGAGGTGGTCGACGAGAGAGAGGTTCTGAGCATGCTCGACGACACCTCCGTTTCCGTTTCCGTGGGAATCGAGGAGGAACAGGAGTTTGGAGCGAGCAATTTGGAGTGGCAAATTTTGTTGAACGCGAACAATTTGGAGGGGGCGAATCCCGAGCCCTATTTCGGGGACGGCGAGGACTACGTCTACACCGCGGAGTACGAAATGATGTTCGGGCAATTCAACGAGGTCGGGAGGCCTCCGGCGTCGGTTTCCGTCGTGAGGAATCTTCCGACGGTGGTTGTGACCGGCGATGACGTGGCGAACGACAACGCGGTTTGCGCGGTTTGTAAGGAGGAGTTTGGCGTTGGGGAGCGGGCGAAGCAGTTGCCGTGCTCGCATCGTTACCATGGGGACTGCATTGTGCCGTGGTTGGGGATGAGGAACACTTGTCCCGTTTGTCGCTATGAATTTCCCACTGATGATGCCGATTATGAGCGGAGGAAGGCGCAGAGATCTGTCATTtga 999 0.5786 MADVTTYLRHHRDPDDEQTLIPFPYWDLDFDFDPEFPPNPFSLTDRENQVNFVMDLFHQRVEQSQLTDPLSNDAVFGVIDGLGLDLDLGFPPAADDFFVGRSLSVGSDSDEEHSHEGNDVRGICAHSDEEDYANENDDVSSIPLCWDSLQLEDNRDNNYEDFEWEEVVDEREVLSMLDDTSVSVSVGIEEEQEFGASNLEWQILLNANNLEGANPEPYFGDGEDYVYTAEYEMMFGQFNEVGRPPASVSVVRNLPTVVVTGDDVANDNAVCAVCKEEFGVGERAKQLPCSHRYHGDCIVPWLGMRNTCPVCRYEFPTDDADYERRKAQRSVI 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1155 332 PANTHER - 15 74 - -
Ssu6g1155 332 ProSiteProfiles Zinc finger RING-type profile. 271 312 IPR001841 -
Ssu6g1155 332 CDD RING-H2_RNF126_like 271 312 - -
Ssu6g1155 332 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 243 331 - -
Ssu6g1155 332 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 15 74 - -
Ssu6g1155 332 SMART ring_2 271 311 IPR001841 -
Ssu6g1155 332 PANTHER - 243 331 - -
Ssu6g1155 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 318 IPR013083 -
Ssu6g1155 332 Pfam Ring finger domain 271 312 IPR001841 -
Ssu6g1155 332 SUPERFAMILY RING/U-box 252 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1155 Ssu-Chr6 18809345 18810343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1155 141 318 C3H Transcription Factor Family AT5G60820 49.761 4.00e-54 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1155 - - gmx:100794303 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1155 6 18809345 18810343 Ssu6g1155 6 18809345 18810343 ECH