Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu6g1154 | ATGGAAGGCAACGATGATGATGAACTCCATGTAGCACCTTATGCTTCCCTAACACAGTACCTTCACTATCCTTCTCCAACCTCAACAAACCTCCTGACCATGGAAACTGGGGAAGGCCATGCTTTGACCCATATGGATCCACCTCATGGTTTACATCATATTCCATTTTTCTGCTCCCAACTGCACCTTCCTAGCAACAGCAACAACCCAATTCAAATCCCACTCCATAGATCCTCTCCCAACACATCGTcaaacagcaacaacaacaattctgATGAAGCGAAGGCCCTCCTTGATGacagaaagaagaagaggatgtTCTCCAACAGAGAATCTGCTCGCAGGTCACGGATGCGAAAGAAGCAACAAATTGAAGTCCTGCAGTATCATGTGGATCATCTGCAGACATTAAACCATCAACTGTCCCAAAAGATCATTTACTTGTTGGAATGCAACCAACAAATCCACCAACAGAATGCTCAGCTAAAAGAGAAAGTTACCTCTCTTCAGGTAGCACTCTCTGACTTTTTGGTTCCTGCTGGAAGTGCTGAGCAACCTCACCACATCCCTAATGGTTTCCTAGCTGAGCCCTCAACTCGACCAATTGCAAGTTCCAGAGCATAG | 624 | 0.4279 | MEGNDDDELHVAPYASLTQYLHYPSPTSTNLLTMETGEGHALTHMDPPHGLHHIPFFCSQLHLPSNSNNPIQIPLHRSSPNTSSNSNNNNSDEAKALLDDRKKKRMFSNRESARRSRMRKKQQIEVLQYHVDHLQTLNHQLSQKIIYLLECNQQIHQQNAQLKEKVTSLQVALSDFLVPAGSAEQPHHIPNGFLAEPSTRPIASSRA | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu6g1154 | 207 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 104 | 119 | IPR004827 | GO:0003700|GO:0006355 | |
| Ssu6g1154 | 207 | PANTHER | BASIC LEUCINE ZIPPER 43-RELATED | 1 | 200 | IPR044521 | - | |
| Ssu6g1154 | 207 | SMART | brlzneu | 97 | 161 | IPR004827 | GO:0003700|GO:0006355 | |
| Ssu6g1154 | 207 | Pfam | bZIP transcription factor | 101 | 159 | IPR004827 | GO:0003700|GO:0006355 | |
| Ssu6g1154 | 207 | MobiDBLite | consensus disorder prediction | 94 | 119 | - | - | |
| Ssu6g1154 | 207 | MobiDBLite | consensus disorder prediction | 68 | 119 | - | - | |
| Ssu6g1154 | 207 | Coils | Coil | 152 | 172 | - | - | |
| Ssu6g1154 | 207 | CDD | bZIP_plant_GBF1 | 102 | 150 | IPR045314 | GO:0003700|GO:0006355 | |
| Ssu6g1154 | 207 | PANTHER | BASIC LEUCINE-ZIPPER 70-RELATED | 1 | 200 | - | - | |
| Ssu6g1154 | 207 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 99 | 162 | IPR004827 | GO:0003700|GO:0006355 | |
| Ssu6g1154 | 207 | Gene3D | - | 100 | 153 | - | - | |
| Ssu6g1154 | 207 | MobiDBLite | consensus disorder prediction | 68 | 93 | - | - | |
| Ssu6g1154 | 207 | SUPERFAMILY | Leucine zipper domain | 101 | 152 | IPR046347 | GO:0003700|GO:0006355 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu6g1154 | Ssu-Chr6 | 18803577 | 18804200 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu6g1154 | 99 | 204 | bZIP Transcription Factor Family | AT5G60830 | 53.704 | 1.49e-29 | 107 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | bZIP | Ssu6g1154 | bZIP_1 | 5.7e-12 | CL0018 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu6g1154 | - | - | aprc:113874797 | 348.591 |
Event-related genes