Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1150 ATGGGGTGCTCATTCTCCGGTTTAAACGCACTCTACGACTCCGTGAACGGCGGAGGCGACGTGTGGATCAACGACAACCGTTTCCGCATCGTGCGGCAGCTCGGCGAAGGTGGCTTCGCCTACGTCTACCTCATCAAGGAGGTGATTAACGACTCTGCCGCCGGTGGCCTCGCCAAGAAGCTCAAACACTCCTCTCATCTCTCCGATGACGGGACTTATGCTATGAAAAAGGTCCTCATTCAGAACAATGAACAGCTGGAGTTGGTCAGGGAGGAGATCCGTGTTTCATCACTGTTCAATCACCCCAATCTGCTTCCACTTCTTGATCATGCGATCATTTCTGTGAAGCCTACCCAAGAAACATCTTGGAACCATGAAGCATACTTGTTATTTCCAGTTCATTTGGATGGAACATTGCTAGACAATGCCAAAATAATGAAAGCCAAGAAGGAATTCTATTCTACCTCAGATGTGCTTCAAATATTTCGGCAGCTTTGTGCAGGACTCAAGCACATGCACAGTTTTGATCCTCCATATGCACATAATGATGTCAAACCTGGTAATGTTCTCATAACACGTAGAAAAGGACAACCACCTCTTGCCATACTGATGGATTTTGGCAGTGCTTGTCCTGCGAGGAAGCAAATTAGCTCCAGATCAGAGGCACTCCAGTTGCAGGAATGGGCATCTGAACATTGCTCTGCTCCTTTCCGAGCTCCTGAGCTGTGGGATTGCCCAAGCCATGCTGATATAGATGAGAGGACTGACATCTGGTCGCTAGGATGCACATTATATGCAATAGTGTATGGGGTATCTCCATTTGAATATGCACTTGGAGAGTCTGGTGGAAGCCTGCAATTAGCTATTGTAAATGCTCAGGTCAAATGGCCAGCTGGACCTAAGCCTCCATATCCAGAAGCTCTTCATCAGTTTGTATCATGGATGCTTCAGCCCCAGGCTGCTATGCGGCCCCGGATAGATGATATCATTATCCATGTTGATAAGTTGATTGCAAAGTTCTCTCATTGA 1029 0.4733 MGCSFSGLNALYDSVNGGGDVWINDNRFRIVRQLGEGGFAYVYLIKEVINDSAAGGLAKKLKHSSHLSDDGTYAMKKVLIQNNEQLELVREEIRVSSLFNHPNLLPLLDHAIISVKPTQETSWNHEAYLLFPVHLDGTLLDNAKIMKAKKEFYSTSDVLQIFRQLCAGLKHMHSFDPPYAHNDVKPGNVLITRRKGQPPLAILMDFGSACPARKQISSRSEALQLQEWASEHCSAPFRAPELWDCPSHADIDERTDIWSLGCTLYAIVYGVSPFEYALGESGGSLQLAIVNAQVKWPAGPKPPYPEALHQFVSWMLQPQAAMRPRIDDIIIHVDKLIAKFSH 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1150 342 Gene3D Transferase(Phosphotransferase) domain 1 15 341 - -
Ssu6g1150 342 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 1 342 - -
Ssu6g1150 342 Pfam Protein kinase domain 66 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1150 342 ProSitePatterns Protein kinases ATP-binding region signature. 34 60 IPR017441 GO:0005524
Ssu6g1150 342 ProSiteProfiles Protein kinase domain profile. 28 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1150 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Ssu6g1150 342 PANTHER - 1 342 - -
Ssu6g1150 342 CDD STKc_16 27 338 - -
Ssu6g1150 342 SUPERFAMILY Protein kinase-like (PK-like) 20 332 IPR011009 -
Ssu6g1150 342 SMART serkin_6 28 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1150 Ssu-Chr6 18716882 18721410 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1150 33 332 EF-hand Containing Proteins AT4G04710 25.246 2.97e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Ssu6g1150 Pkinase 1.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1150 K08856 - gmx:100803659 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1150 6 18716882 18721410 Ssu6g1150 6 18716882 18721410 ECH