Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1149 atgGGGAGTGACAGCGAGGCAGAAAAGTCGGTgcagaaagagaaggagaaggagaagaagaagatgctGGCGCTTGCTCCCATTGCTAAACCCCTTACCGGCAAGAAGCTTTGCAAGCGAACCCTAAAACTTGTTCGTAGAGCTGCTCAACACAAATGCTTAAAAAGAGGAGTCAAAGAGGTGGTCAAAAGTATAAGGCGAGGTCATAAAGGATTGTGTGTTATAGCTGGGAACATATCACCCATTGATGTCATCACTCATGTTCCTATCCTCTGTGAAGAGGCTGacattccatatatatatgtccCATCTAAAGAAgACCTTGCAAGCGCAGGAGCAACAAAGAGACCTACTTGCTGTGTTTTGGTACTGATAAAGCCTGCAAAGGGAGAAATAGAACAAGGGGAACAAGAGAAACTAAAGTCAGATTATGATCAAGTTGTATCGGAAGTTACTGAGGTTACAGCTTCACTTTTTTGA 480 0.3854 MGSDSEAEKSVQKEKEKEKKKMLALAPIAKPLTGKKLCKRTLKLVRRAAQHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEEADIPYIYVPSKEDLASAGATKRPTCCVLVLIKPAKGEIEQGEQEKLKSDYDQVVSEVTEVTASLF 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1149 159 SUPERFAMILY L30e-like 23 134 IPR029064 -
Ssu6g1149 159 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 42 124 IPR004038 -
Ssu6g1149 159 PANTHER - 2 157 - -
Ssu6g1149 159 MobiDBLite consensus disorder prediction 1 20 - -
Ssu6g1149 159 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 157 - -
Ssu6g1149 159 PRINTS High mobility group-like nuclear protein signature 27 40 IPR002415 GO:0003723|GO:0005730
Ssu6g1149 159 PRINTS High mobility group-like nuclear protein signature 40 55 IPR002415 GO:0003723|GO:0005730
Ssu6g1149 159 PRINTS High mobility group-like nuclear protein signature 101 113 IPR002415 GO:0003723|GO:0005730
Ssu6g1149 159 PRINTS High mobility group-like nuclear protein signature 57 67 IPR002415 GO:0003723|GO:0005730
Ssu6g1149 159 Gene3D - 19 156 IPR029064 -
Ssu6g1149 159 PRINTS Ribosomal protein L7A/RS6 family signature 99 113 IPR018492 -
Ssu6g1149 159 PRINTS Ribosomal protein L7A/RS6 family signature 54 68 IPR018492 -
Ssu6g1149 159 PRINTS Ribosomal protein L7A/RS6 family signature 73 86 IPR018492 -
Ssu6g1149 159 PRINTS Ribosomal protein L7A/RS6 family signature 89 99 IPR018492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1149 Ssu-Chr6 18706628 18708185 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1149 54 126 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 30.137 1.08e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1149 K11129 - gmx:100305515 272.707