Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1147 ATGGCACAAGATACTGTTTCTGGTGCTGATTCGCCTCGGCGACGTCTATTACGAGATCAGGTTCAAGTGGTTAAAAGAAAGGATTCTGATCGATATGAAATTGTTCCTATCCAAGACTCTTTGTCATTTGAGAAAGGATTCTTCATATTTATTCGTGCGTGCCAGTTGTTAGCTCAAAAGAATGATGGACTCATATTAGTAGGAGTTGCAGGTCCATCTGGAGCAGGGAAAACTGTTTTCACCGAGAAGGTCCTCAATTTTATGCCAAGCATAGCTGTGATAACAATGGACAACTATAATGATTCTAGTAGAATTATTGATGGAAACTTTGATGACCCTCGGTTGACGGATTATGATAGCTTGCTCAAAAACATACAGGGTCTTAAAGCAGGGAAGCCTGTTCAAGTTCCAATATATGATTTCAAATCTAGTTCTCGCATAGGTTACAGGACTATTGAAGTCCCTAGCTCTCGTATAGTAATCATAGAAGGCATCTACGCCTTAAGTGAAAAATTACGACCTATGCTTGATCTTCGTGTTTCTGTCACTGGTGGAGTTCATTTTGACCTTGTCAAGCGTGTTTTGCGGGACATTCAACGTGCTGGTCAAGAGCCTGAagaaataattcatcaaatctCTGAAACGGTATATCCTATGTATAAAGCTTTTATTGAGCCAGATCTCCAAACAGCACATATAAAGATTATTAACAAGTTTAATCCATTCTCTGGATTCCAGAATCCCACCTACATATTGAAGTCAGCAAGAGCTGTGACAGTTGATCAAATCAAGGCAGTTATTGCGGCAGAGCATACCGAAACCAAAGAGgaaacatatgacatatttcttcTACCCCCTGGGGAAGACCCTGAAGCTTGTCAATCATATTTGAGAATGAGAAATCGTGATGGAAAGTACAATCTCATGTTTGAGGAATGGGTGACAGATAGTCCATTCATAATATCACCTAGAATTACTTTTGAGGTCAGCGTGCGCCTTCTTGGAGGGCTGATGGCCTTGGGATACACAATTGCAGCTATCCTGAAAAGAAGCAGCCATGTTTTTCATGATGATAAAGTGACCATAAAAACTGATTGGCTAGAACAACTTAATCGCATATATGTTCAGGTGCAAGGGAAAGACAGAAACTATTGCAAATTTGTAGCAGAGAAACTGGGGATGGATGGTTCCTATGTTCCTCGCACTTACATTGAACAAATTCAGCTAGAAAAGCTTGTAAACGATGTGATGGCATTGCCAGATGATCTTAAGACAAAACTCAGCATAGATGATGACTTGGTTTCAAGCCCCAAAGAAGCCCTTTCCAGAGCTTCAGCAGATAGGAGAATGAAGTATCTTAATCGTGGTATTTCACACTCATATTCAAATCAAAGGGAGAAGATTCTACCTAAGCTGACTAAACTTGCTATAAATAACACAAGATTTGATGGAAGAGCACTAGAATCACCTGCACCGATTGCTAACCATGGAGTCATCACTCAACTTTCTGATCAAATTTCCACGTTAAATGAAAGAATGGATGAATTCACCTCCCGTATTGAAGAGCTGAATTCAAAGTTTGCTATCAGAAAAGTTTCAGCCAGtcaacaaaacttggctttaCAGGCTGAGGCCTGCAATGGTTCAGGCCCCACTTCCTTATTTGTAACTGGATTAAGCAATGGTTCTTTGACTGGATCATTGCTACCTAATTCTTCATCATCTTCTCAACTGGCTAAAGAGTCTCCACTGATGGAAGAGgtatTAGTTATTGCACGAGGACAACGCCAAATCATGCATCAACTAGATACTCTGTGCAATCTTCTGCATGAATACTTTGGAGAAAGGTCACGCCTGGGAAGACCAGACCAAACAGGTAGAATGCGTGAAGCTGAATCCGTTGCCATCCCCCTGGTTCTGACTCTGGCCATTGGTGCTGTTGGTGTGTTTCTGTTCAGAGGTTTGACATCCCAAaagtaa 1980 0.4 MAQDTVSGADSPRRRLLRDQVQVVKRKDSDRYEIVPIQDSLSFEKGFFIFIRACQLLAQKNDGLILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDSLLKNIQGLKAGKPVQVPIYDFKSSSRIGYRTIEVPSSRIVIIEGIYALSEKLRPMLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFSGFQNPTYILKSARAVTVDQIKAVIAAEHTETKEETYDIFLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHVFHDDKVTIKTDWLEQLNRIYVQVQGKDRNYCKFVAEKLGMDGSYVPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDDLVSSPKEALSRASADRRMKYLNRGISHSYSNQREKILPKLTKLAINNTRFDGRALESPAPIANHGVITQLSDQISTLNERMDEFTSRIEELNSKFAIRKVSASQQNLALQAEACNGSGPTSLFVTGLSNGSLTGSLLPNSSSSSQLAKESPLMEEVLVIARGQRQIMHQLDTLCNLLHEYFGERSRLGRPDQTGRMREAESVAIPLVLTLAIGAVGVFLFRGLTSQK 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1147 659 Coils Coil 499 526 - -
Ssu6g1147 659 PANTHER URIDINE KINASE 7 647 - -
Ssu6g1147 659 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 7 647 - -
Ssu6g1147 659 SUPERFAMILY CYTH-like phosphatases 259 406 IPR033469 -
Ssu6g1147 659 Pfam Phosphoribulokinase / Uridine kinase family 67 235 IPR006083 GO:0005524|GO:0016301
Ssu6g1147 659 Pfam CYTH domain 271 403 IPR023577 -
Ssu6g1147 659 PRINTS Uridine kinase signature 223 236 - -
Ssu6g1147 659 PRINTS Uridine kinase signature 64 81 - -
Ssu6g1147 659 PRINTS Uridine kinase signature 131 146 - -
Ssu6g1147 659 PRINTS Uridine kinase signature 187 197 - -
Ssu6g1147 659 Gene3D - 65 245 IPR027417 -
Ssu6g1147 659 CDD UMPK_like 66 238 - -
Ssu6g1147 659 ProSiteProfiles CYTH domain profile. 247 409 IPR023577 -
Ssu6g1147 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 235 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1147 Ssu-Chr6 18659813 18669007 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1147 65 321 PRT Gene Family AT5G40870 24.812 4.64e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1147 K00876 - gmx:100803122 1204.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1147 6 18659813 18669007 Ssu6g1147 6 18659813 18669007 ECH
Ssu5g1458 5 46577328 46599562 Ssu6g1147 6 18659813 18669007 PCT