Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1137 ATGGAAAACGTAGACACCTCAAAATTTCCACACCAAtctcaaaaccaaaacaagaatCTTCCCTTGATGCCTATTGAAATAGACAAGTCCTATGAGAAGAGAGTCATGAAGATTCCAAAACTAGCAAAGAGTGATAAAAAGTTTCTTGGGGTGAGACAAAGACCTTCAGGAAGATGGATTGCTGAGATCAAGGACACGTCACAGAAACTAAGGCTTTGGTTGGGAACTTTCGACAAAGCAGAAGAGGCTGCCTTGACTTATGACTGTGCTGCAAGGCTTCTTAGAGGGAGAAATGCCAAAACAAACTTTCCAAACCCTGGAATCATGAACAGTCATGAGGAAGACTgcagcattttgggtaagaatcCAAGGGCTTACCAACTTCTTAAGCATGCAGTCATGAAGAATCATACACTTTCATCATCTTTTTATTCCACAGTCATGCCTTGGAAAAACCAGATCATGAGAGACGAATTTGACACCCTTGTTGAGGAAACTATAGTTTGTTCCATTCCTGAACAAGGCTCTGGGTGCTGTGGAATTTCATTTGGAAGTTCTAAGGTTTATTCTTCTGTTGTTGTTGCTCCTTCTTTCAGTGCTTCCCATTGTTTAACAGGAGAAAatcatgaagaaaaagaaactccCTAA 648 0.3704 MENVDTSKFPHQSQNQNKNLPLMPIEIDKSYEKRVMKIPKLAKSDKKFLGVRQRPSGRWIAEIKDTSQKLRLWLGTFDKAEEAALTYDCAARLLRGRNAKTNFPNPGIMNSHEEDCSILGKNPRAYQLLKHAVMKNHTLSSSFYSTVMPWKNQIMRDEFDTLVEETIVCSIPEQGSGCCGISFGSSKVYSSVVVAPSFSASHCLTGENHEEKETP 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1137 215 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 208 - -
Ssu6g1137 215 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
Ssu6g1137 215 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Ssu6g1137 215 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Ssu6g1137 215 CDD AP2 46 105 IPR001471 GO:0003700|GO:0006355
Ssu6g1137 215 MobiDBLite consensus disorder prediction 1 21 - -
Ssu6g1137 215 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Ssu6g1137 215 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110-LIKE 1 208 - -
Ssu6g1137 215 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Ssu6g1137 215 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Ssu6g1137 215 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1137 Ssu-Chr6 18564418 18565065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1137 47 105 AP2-EREBP Transcription Factor Family AT5G19790 72.881 1.51e-25 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu6g1137 AP2 2.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1137 K09286 - gmx:100807374 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1137 6 18564418 18565065 Ssu6g1137 6 18564418 18565065 ECH