Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1133 ATGGCTGGGGGGAGGAGGAGGAGGCACCACTTCGGCAGAATCCATGCATTCTCGTGTGGGAAAGCTTCCATGAAAGATGAGCATTCACTAATAGGAGGCCCTGGCTTCTCAAGGAAAGTCTATTGCAATGACCCTGAACGTGCCGTGGCGAGTCTTCTCAATTATGGTGACAATTATGTCAGAACAACTAAGTATACGTGGGCCACGTTCCTCCCCAAGTCCTTGTTTGAGCAATTCAGGAGGGCTGCAAATTTCTACTTCCTCGTTTGTGCAGTTTTGTCTTTCTTCCCGGTTTCTCCTTACACAGGCATCAGTAATGTTGTCCCTCTACTGGTTGTGATCGCTGCCACCATGGTCAAAGAGTTCATTGAGGATTTTAGGAGGAAAAAACAGGATATAGAGATGaataacagaaaagttaaagtGCATCGTGGAGGTGGTGTTTTTGACTATTCTAAATGGAGGGATTTGAAAGTTGGAGATGTAGTGAAGGTGGGAAAAGATGAATTTTTTCCTGCGGATCTCATCTTACTTGCATCAAACTATGATGATGCAATTTGTTATGTTGAGACCATGAATCTTGATGGGGAGACAAATCTGAAACTGAAACAAGCGCTGGAAGGAACCTCAGAGTTGCAAGAAGACCtgaactttcaaaatttcaggGCTGTCATCAAATGTGAAGATCCAAATGCAAATTTGTACGCATTTGTTGGTAGTCTGGAGCTTGAGGATCAACAGTATCCTCTTGCACCTCAACAGCTACTGCTTAGGGATTCTAAGCTGAGGAACACGGATTTTATTTATGGTGTGGTTATCTTTACTGGCAACGATACAAAGGTTATGCAGAATGCAACAGATCCACCATCCAAGAGAAGCAAAATTGAGAAAAGGATGGATAAGATTATCTACTGCCTCTTCGTTGtacttattttgatttctttcattGGGTCCATATTCTTTGGGATTGCAACAAATGATGACCTTGAAAATGGAAGAATGAAGAGATGGTACCTTAGACCAGATGATACCAAAATTTACTATGACCCAAATAAACCAGTAGTTGCTGCCATTCTGCATTTCTTGACAGCACTTATGTTGTATGGATACTTGATTCCAATTTCCTTATATGTATCCATTGAAATTGTAAAGATTCTTCAAAGCATTTTCATCAACCAGGATATGCACATGTATTATGAGGAAACTGACAAGCCAGCACATGCTCGTACATCAAATTTGAATGAAGAACTTGGCCAAGTCGATACCATACTTTCAGATAAGACAGGAACTTTGACTTGCAATTCTATGGAATTTATCAAGTGTTCTATTGCTGGGGTTGCTTATGGACGAGGAGTTACAGAAGTTGAGAGAGCTCTATCTAGAAGACAAGACTCACATTCAGGTCAAGAGTTGAAAGAAAACAACATTGCAAAGATTGGTGAATCAAAGTCATCCATTAAAGGGTTTAACTTGAAGGATGAAAGGATCATGAATGGAAATTGGATCAAAGAACCCAATGCCAATGTAATCCAGAACTTCCTAAGATTGCTGGCTGTATGCCATACTGCAATACCTGAAGTTGATGAAGAAACTGGTAAGGTTTCATATGAAGCTGAATCACCAGATGAGGCAGCTTTTGTGATTGCAGCCAGGGAACTTGGATTTGAATTTTATGAGAGGACACATACAACTATTTCACTGCGTGAATTACACCCCATGTCAGGCAAGAAAACTGAAAGATCCTACaaacttttgaatatattagaGTTTAGTAGTGCAAGAAAGCGGATGTCTGTAATTGTAAGAGATGAGGAGGATAAACTACTACTCCTTAGCAAAGGCGCTGACAGTGTAATGTTTGAACGAATTGCCAAGAATGGAAGGGATTTTGAAGAGAAGACAAAGCAGCACATTAGTGAATATGCTGATTCTGGTTTGAGGACCTTAATACTTGCATATCGTGAACTTAATGAGGAAGAGtacaatcaatttaataaagAGTTTACAGAGGCCAAGAACTTAGTGAGTGCAGACCAGGAGCAGATTGTTGaggaaattatacaaaatattgaGAAGGATTTAATTCTTCTTGGTGCTACTGCGGTTGAAGACAAACTACAAGATGGGGTTCCTGAATGCATTGACAAGCTAGCACAGGCTGGGATTAAGCTATGGGTTTTAACTGGTGACAAAATGGAGACAGCAATTAATATTGGATTTGCTTGTAGTTTACTCAGGCAAGGAatgaaacaaattataattagctCAGATACTTCAGAAAACAAGTCATTGGAGAAAATGGAGGACAAGTCTGCTGCTGCAGTGGCAATTAAGTCAAGTGTTCTTCGTCAACTAAGGGAGGCAAAGACATTACTTTCTACATCAgatgaaaactttgaggccttaGCCCTTATCATTGATGGGAAGTCTCTTACTTATGCACTAGAAGATGATGTAAAGGACTTGTTTCTTGAACTTGCCATTGGCTGTGCATCTGTTATCTGCTGTCGTTCATCTCCCAAGCAGAAAGCACTtGTTACAAGACTGGTGAAGATGAGAACTGGTAGTACAACTCTAGCTATTGGAGATGGAGCAAACGATGTTGGAATGCTCCAAGAAGCAGACATTGGAATTGGTATCAGTGGTGTTGAAGGAATGCAGGCAGTTATGTCAAGTGATATTGCAATTGCCCAATTTCGGTTTCTAGAGCGCTTACTTCTTGTGCATGGACATTGGTGTTACAGAAGGATCTCATCAATGATCTGCTACTTCTTTTACAAGAATATTGCCTTCGGTTTCACTCTGTTCTTCTTTGAAATGTATGCCTCATTCTCGGGGCAAGCTGCATACAATGATTGGTTCTTGTCACTATACAACGTTTTCTTCACTTCGCTTCCTGTAATTGCACTGGGAGTGTTTGATCAGGATGTCTCTTCCAAATTATGTCTCAAGTTTCCATTATTATATCAAGAAGGCATCCAAAACATCCTATTTAGCTGGAAACGAATCATTGGTTGGGCATTGAATGGAGTTGTGACTTCTGCCATCATATTCTTCTTTTGCATCCGTACTATGGAACATCAGGCATTCCGTAAAGGCGGTGAAGTCATGGAGCTACAAGTTCTTGGTGCCACCATGTACACCTGTGTTGTGTGGGTGGTGAATTGCCAAATGGCATTATCTATCAGTTACTTCACttacatacaacatatattcatTTGGGGAAGCATTATATTCTGGTATATATTCCTCCTGGCATATGGAGCCATAGACCCTTCCTTCTCAACCACTGCCTATAAGGTCTTCATTGAAGCTCTTGCACCGGCCCCGTCTTTCTGGTTCATCACTTTGCTCATTCTTATTGCTTCCCTCCTTCCATATTTTGCATATGCCTGCATCCAAATGCGTTTCTTCCCTATGTATCATCAAATGATACAGTGGATAAGAAAGGACGGGCAAACAAATGATCCAGAATACTGTAATGTGGTAAGGCAGCGATCAATAAGACCCACAACGGTTGGAACCACAGCTCGTTTGGAAGCATCCAAACGTTTTGGAATTGAAGGATCCAAACGTTTTGAAATCGAAGCACCCAGAAGACTTGGAGCATCCAAACGTTCTGAAGGGAAGTCTGAGGACCGATGA 3645 0.3964 MAGGRRRRHHFGRIHAFSCGKASMKDEHSLIGGPGFSRKVYCNDPERAVASLLNYGDNYVRTTKYTWATFLPKSLFEQFRRAANFYFLVCAVLSFFPVSPYTGISNVVPLLVVIAATMVKEFIEDFRRKKQDIEMNNRKVKVHRGGGVFDYSKWRDLKVGDVVKVGKDEFFPADLILLASNYDDAICYVETMNLDGETNLKLKQALEGTSELQEDLNFQNFRAVIKCEDPNANLYAFVGSLELEDQQYPLAPQQLLLRDSKLRNTDFIYGVVIFTGNDTKVMQNATDPPSKRSKIEKRMDKIIYCLFVVLILISFIGSIFFGIATNDDLENGRMKRWYLRPDDTKIYYDPNKPVVAAILHFLTALMLYGYLIPISLYVSIEIVKILQSIFINQDMHMYYEETDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGRGVTEVERALSRRQDSHSGQELKENNIAKIGESKSSIKGFNLKDERIMNGNWIKEPNANVIQNFLRLLAVCHTAIPEVDEETGKVSYEAESPDEAAFVIAARELGFEFYERTHTTISLRELHPMSGKKTERSYKLLNILEFSSARKRMSVIVRDEEDKLLLLSKGADSVMFERIAKNGRDFEEKTKQHISEYADSGLRTLILAYRELNEEEYNQFNKEFTEAKNLVSADQEQIVEEIIQNIEKDLILLGATAVEDKLQDGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMKQIIISSDTSENKSLEKMEDKSAAAVAIKSSVLRQLREAKTLLSTSDENFEALALIIDGKSLTYALEDDVKDLFLELAIGCASVICCRSSPKQKALVTRLVKMRTGSTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRFLERLLLVHGHWCYRRISSMICYFFYKNIAFGFTLFFFEMYASFSGQAAYNDWFLSLYNVFFTSLPVIALGVFDQDVSSKLCLKFPLLYQEGIQNILFSWKRIIGWALNGVVTSAIIFFFCIRTMEHQAFRKGGEVMELQVLGATMYTCVVWVVNCQMALSISYFTYIQHIFIWGSIIFWYIFLLAYGAIDPSFSTTAYKVFIEALAPAPSFWFITLLILIASLLPYFAYACIQMRFFPMYHQMIQWIRKDGQTNDPEYCNVVRQRSIRPTTVGTTARLEASKRFGIEGSKRFEIEAPRRLGASKRSEGKSEDR 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1133 1214 Gene3D - 117 286 - -
Ssu6g1133 1214 CDD P-type_ATPase_APLT_Dnf-like 57 1021 - -
Ssu6g1133 1214 Gene3D - 693 901 IPR023214 -
Ssu6g1133 1214 Pfam Phospholipid-translocating P-type ATPase C-terminal 889 1139 IPR032630 -
Ssu6g1133 1214 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Ssu6g1133 1214 SUPERFAMILY HAD-like 419 916 IPR036412 -
Ssu6g1133 1214 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1184 - -
Ssu6g1133 1214 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 827 944 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu6g1133 1214 SUPERFAMILY Calcium ATPase, transduction domain A 137 285 IPR008250 -
Ssu6g1133 1214 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 55 1146 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Ssu6g1133 1214 SFLD p-type atpase 406 912 IPR044492 -
Ssu6g1133 1214 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 1184 - -
Ssu6g1133 1214 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 485 699 IPR023299 GO:0000166
Ssu6g1133 1214 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Ssu6g1133 1214 PRINTS P-type cation-transporting ATPase superfamily signature 861 880 - -
Ssu6g1133 1214 PRINTS P-type cation-transporting ATPase superfamily signature 747 757 - -
Ssu6g1133 1214 Pfam Phospholipid-translocating ATPase N-terminal 40 104 IPR032631 -
Ssu6g1133 1214 Pfam Cation transport ATPase (P-type) 520 622 - -
Ssu6g1133 1214 SUPERFAMILY Calcium ATPase, transmembrane domain M 46 1139 IPR023298 -
Ssu6g1133 1214 SFLD C1.7: P-type atpase like 406 912 - -
Ssu6g1133 1214 Gene3D - 563 672 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1133 Ssu-Chr6 18505107 18510820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1133 1 1184 Primary Pumps ATPases AT1G68710 68.745 0.0 1767
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1133 K01530 K14802 gmx:100799312 2171.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1977 1 55471728 55477385 Ssu6g1133 6 18505107 18510820 ECH
Ssu6g1133 6 18505107 18510820 Ssu6g1133 6 18505107 18510820 ECH