Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1131 ATGGCGAAGATAAGTGATTCGGATAGGTCAATCGATGAGGAGATTGTGGCGGTCGACATTGCTGTTAACCAAGAAGACTGGTTGGGGTTTGATGTTCCTTTAAATAATGCAGGTGGTGATTATGATTGGGTTAAGGATGACGTGCGCGATGTAAGATCCAAGTATACAGCCAAAAATTTactatGCAATTCATTTGAGGTTTCAACTGCTTGCCCTCAATCTCCTCCTAGAAAAAGGGTTCAAGAAGTTAAGAATGGGACTCAGGACTTTGGGTTCCTAGGGGCTCTGGTGGCCCACCTTCACTCGCAGGACTTAGGGTGCTTGAAGGGTGGGGTGGCTAACCTTCACTCACAGGTCATGAAGCTAACCTTCACTCGCAGGTCTTCGGGTGTCGAGGGGGGTCAAGTGGTCGACTTTTGCTCGCATGTCACAGGGTGGTTAGGTGTTGCTTGGTTGACCTTCGCTCACAGATTATATGGTCGAATCATGGAGCCCATGGACATCGTTGGCAAATCAAAGGAAGATGCTTCGCTTCCTAAAGcaacaatgacaaaaattattaaagagatGTTACCCCCAGATGTACGTGTTGCGAGAGATGCCCAAGATCTATTGATTGAGTGTTGTGTAGAGTTTATAAACCTCATCTCGTCAGAATCCAATGAAGTCTGTAACAGAGAGGAAAAACGAACAATCGCACCTGAGCATGTATTGAAGGCTTTACAGGTTCTTGGATTTGGTGAGTACATTGAAGAAGTTTATGCAGCATACGAACAGCACAAGCTGGAGACCAtgGACTCTTTAAAGGGTGGTAAATGGAGCAATGGAGCTGAGATGACTGAGGAAGAAGCATTAGCAGAGCAGCAAAGAATGTTTGCAGAGGCACGTGCTAGGATGAATGGTGGAGCCATTGCTTCCAAGCAGCCAGATGCTGACCAAAGTTTAGATAGCTAA 954 0.4486 MAKISDSDRSIDEEIVAVDIAVNQEDWLGFDVPLNNAGGDYDWVKDDVRDVRSKYTAKNLLCNSFEVSTACPQSPPRKRVQEVKNGTQDFGFLGALVAHLHSQDLGCLKGGVANLHSQVMKLTFTRRSSGVEGGQVVDFCSHVTGWLGVAWLTFAHRLYGRIMEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCNREEKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKLETMDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGGAIASKQPDADQSLDS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1131 317 Gene3D Histone, subunit A 166 304 IPR009072 GO:0046982
Ssu6g1131 317 PANTHER PROTEIN DR1 HOMOLOG 163 316 IPR044255 -
Ssu6g1131 317 SUPERFAMILY Histone-fold 174 304 IPR009072 GO:0046982
Ssu6g1131 317 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 176 241 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1131 Ssu-Chr6 18437559 18451969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1131 163 313 CCAAT-DR1 Transcription Factor Family AT5G23090 83.117 4.79e-89 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ssu6g1131 CBFD_NFYB_HMF 1.3e-21 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1131 K21751 - gmx:100807912 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1131 6 18437559 18451969 Ssu6g1131 6 18437559 18451969 ECH