Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1128 ATGCAGATTCAAGCGAGAGCAGTTCCGCCACTTTTGATTGGAAAAGATGTTCTCGGTGCTGCAAGGACTGGTTCTGGAAAAACTCTTGCCTTCTTAATTCCTGCTGTGGAGCTGTTGTACAATGTTAAATTTACACCTCGAAATGGAGCTGGTGTGGTTGTTATTTGTCCGACTAGAGAGCTTGCAATACAGACACATGCTGTGGCCAAGGAGCTTCTCAAGTATCATTCACAAACTCTTGGATTGGTTATTGGAGGTTCGGCTAGAAAAGTTGAAGCTGAACGCATTGCTAAAGGGATAAATCTATTGGTAGCAACTCCCGGTCGTCTTCTAGATCATCTTCAAAATACAAAAGgattcatatataaaaacttgAAGTGCCTCATGATTGATGAAGCTGACAGGATCTTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATTATTAAGGTCCTTCCAAAGAATAGGCAAACAGCTTTATTTTCGGCAACACAAACAAAGAAGGTTGAGGATCTTGCCCGCTTGTCATTTCAGACTACTCCTATCTATATTGATGTAGATGATGGGAGAACCAAGGTCACAAATGAAGGATTGCTTCAGGGTTATGTTGTTGTTCCCTGTGCCAAGCGCTTTATTGTTCTCTATTCCTTTTTGAAGAGACACCAGTCAAAAAAAGTCATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCACGCAGACATTCTTAATCTCATTCATTTGAATTGCTCGAGTATTCATGGAAAACAAAAGCAGCAGACCCGGACAACTACCTTCTTTGACTTCTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGCTGTGGATTGGATTGTGCAGTATGATCCACCTGATGAACCCAAGGAATATATCCACAGGGTTGGTAGAACAGCTCGTGGTGAAGGCGGAAAAGGAAATGCTTTGCTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCGCTATCTGAAGGCAGCTAAGGTCCCTGTTAAAGAGTATGCATATGATGAAAAGAAGGTGGCAAACGTACAATCTCACCTGGAGAATTTGGTagtcaacaatttttatttgaacaagatgGCAAAAGAAGCTTATAGATCATACATATTAGCGTACAATTCTCATTCCATGAAGGATATATTCAATGTTCACCGTCTTGATTTGCAGGCCGTTGCTTCTTCGTTCTGTTTTTCAAACCCACCAAATGTGAGTCTGAACATAAACAGCAGTAAGCAAAGGCAGAAAATGCGTAAAGTTGATGGAAGTAGACATGGATTCAGCGACAACAATCCTTATGGAAAGAGAAATGCTGATGATAAGCGGCAGTTTGTGAGGCACTAG 1389 0.4046 MQIQARAVPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYNVKFTPRNGAGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSARKVEAERIAKGINLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKVLPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRTKVTNEGLLQGYVVVPCAKRFIVLYSFLKRHQSKKVMVFFSSCNSVKFHADILNLIHLNCSSIHGKQKQQTRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAYDEKKVANVQSHLENLVVNNFYLNKMAKEAYRSYILAYNSHSMKDIFNVHRLDLQAVASSFCFSNPPNVSLNINSSKQRQKMRKVDGSRHGFSDNNPYGKRNADDKRQFVRH 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1128 462 Gene3D - 198 439 IPR027417 -
Ssu6g1128 462 Pfam Helicase conserved C-terminal domain 213 317 IPR001650 -
Ssu6g1128 462 SMART DUF4217_3 358 421 IPR025313 -
Ssu6g1128 462 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 129 137 IPR000629 -
Ssu6g1128 462 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 210 357 IPR001650 -
Ssu6g1128 462 CDD SF2_C_DEAD 198 328 - -
Ssu6g1128 462 Gene3D - 1 185 IPR027417 -
Ssu6g1128 462 Pfam Domain of unknown function (DUF4217) 359 419 IPR025313 -
Ssu6g1128 462 MobiDBLite consensus disorder prediction 426 462 - -
Ssu6g1128 462 SMART helicmild6 237 318 IPR001650 -
Ssu6g1128 462 Pfam DEAD/DEAH box helicase 2 172 IPR011545 GO:0003676|GO:0005524
Ssu6g1128 462 SMART ultradead3 1 201 IPR014001 -
Ssu6g1128 462 CDD DEADc_DDX18 2 185 IPR044773 GO:0003724|GO:0005524
Ssu6g1128 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 339 IPR027417 -
Ssu6g1128 462 PANTHER RNA HELICASE 2 456 - -
Ssu6g1128 462 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 8 183 IPR014001 -
Ssu6g1128 462 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 2 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1128 Ssu-Chr6 18410931 18416010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1128 3 340 Eukaryotic Initiation Factors Gene Family AT3G19760 28.319 1.27e-42 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1128 K13179 - gmx:100797375 890.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1128 6 18410931 18416010 Ssu6g1128 6 18410931 18416010 ECH