Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1120 ATGGATGCACCACGTGTCTCTCGCACCCCCAAAATCCGGCGCGTCGGTTTCTCCGCTCCCGATTCTTCTGCCACCATGGTTCCGTCGCCACGTCATCCCTCCGTGCCGGTCCCGGAAACGCAGCATTCCGGCGATTGCCACGTGGCATCTGGGAGCTACGATCCCTCGGAAAACCTAAACCTCGCTACCGGCATTGaaaagaaggaagaggaagagaaagagaaagaggttCTGCAATCAAGTACAAAGCCGTTCAAAGCAAAAACTACCAAGGCTGAGAGACGAGCCTTACAAGAGGCACAGAGAGCTGCTAAAGCTGCTTCTAAAGCTGAGGGAAGTAAAGCAGTTGCTGAATCTGGTAGAGCAGCTGCAGGTAAAAGCACAAAGCAGTCTTCACAAAAGAAAGGTGGTCCTTCCTGTGCGTCTCCAGCGGCTACTGATAAGAAAGCAGGAGATCGTCCTCTTGAGAAAGATAGGAAAAAGGATGCTCCTTCTCCACGAATGCAATTTGATGACAAAAGCCGAATGGAAAAGGCTAGAAGGCGTGCAGTAGTCAATCCAACTGAATCTAGAAACAGAGTTGACTTATTTCAGCATTTGCCTCAATATGAACATGGGACTCAGCTTCCTAATCTTGAATCAAAGTTTTTCCAAATTGGTTCAGTGCATCCTGCTGTATTTGAGgTTGGATTGCGTTATTTGGCAGGAGATATATCAGGGGGTAATGCTCGTTGTATTGCAATGCTAAGAGCATTTCAAGATGCCATTAGAGATTACTGCACACCACATGAAAAGGCCCTTGTTAGGGATTTAACTTCAAAAATCAATAGTTATGTATCTTTCTTTACTGAATGTAGACCACTTTCAATGAGCATGGGAAATGCAATTAGGTTTGTAAAGAGCCGTATTGTCAATCTGCCTTTAAATCATTCTGAGTTTGAGGCAAAAGCAGACCTGTGTTCTGATATTGACCAgttcattaatgaaaaaataattcttgcTGATAAGGTGATTGTCCAACATGCTTTTGCAAAGGTTAAAGATGGGGATGTTCTTCTCACATATGGATTGTCATGTGTTGTTGAGATGATTCTTTTATATGCCCATGAGCTGGGAAAACAGTTCCATGTTGTGGTGGTAGATTCACGGCCAAGGCTTGAAGGTCAGGCCTTACTTCGTAGGCTAGTGGCTAAGGGCCTGAGTTGCACATATACTCATATAAATGCTGTTTCTCATATCATGCATGAGGTCACACGAGTTCTTCTGGGAGCTTCTGCAGTTTTCTCCAATGGAACCGTATATTCAACGGTTGGGACTTCTTGTGTTGCAATGGTGGCTCATTCATTTCGTGTTCCTGTATTGATCTGTTGTGAAGcatataaatttcatgaaaGGGTGCTACTGGGTTCAATATGTTCTAATGAACTAGGAGACCCAGATGCTATTGCCAGGGTTCCTGGACGAATGGAAGTCAATTATCTGGACAATTGGGCCAGTGAAGACAATTTGAGGCTTTTGAATTTGATGTATGATGCTACTCCTTCAGATTATGTCTCGTTTATTGTGACAGATTATGGCATGCTCCCTCCTACAAGCGTACCTGTATTAGTTCGTGAATATCGACGAGAGCATTTGTTGATGTAG 1644 0.4252 MDAPRVSRTPKIRRVGFSAPDSSATMVPSPRHPSVPVPETQHSGDCHVASGSYDPSENLNLATGIEKKEEEEKEKEVLQSSTKPFKAKTTKAERRALQEAQRAAKAASKAEGSKAVAESGRAAAGKSTKQSSQKKGGPSCASPAATDKKAGDRPLEKDRKKDAPSPRMQFDDKSRMEKARRRAVVNPTESRNRVDLFQHLPQYEHGTQLPNLESKFFQIGSVHPAVFEVGLRYLAGDISGGNARCIAMLRAFQDAIRDYCTPHEKALVRDLTSKINSYVSFFTECRPLSMSMGNAIRFVKSRIVNLPLNHSEFEAKADLCSDIDQFINEKIILADKVIVQHAFAKVKDGDVLLTYGLSCVVEMILLYAHELGKQFHVVVVDSRPRLEGQALLRRLVAKGLSCTYTHINAVSHIMHEVTRVLLGASAVFSNGTVYSTVGTSCVAMVAHSFRVPVLICCEAYKFHERVLLGSICSNELGDPDAIARVPGRMEVNYLDNWASEDNLRLLNLMYDATPSDYVSFIVTDYGMLPPTSVPVLVREYRREHLLM 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1120 547 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 66 547 - -
Ssu6g1120 547 Gene3D - 334 540 IPR042529 -
Ssu6g1120 547 MobiDBLite consensus disorder prediction 124 139 - -
Ssu6g1120 547 MobiDBLite consensus disorder prediction 63 100 - -
Ssu6g1120 547 SUPERFAMILY NagB/RpiA/CoA transferase-like 224 540 IPR037171 -
Ssu6g1120 547 MobiDBLite consensus disorder prediction 1 187 - -
Ssu6g1120 547 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 66 547 - -
Ssu6g1120 547 Pfam Initiation factor 2 subunit family 238 530 IPR000649 GO:0044237
Ssu6g1120 547 MobiDBLite consensus disorder prediction 149 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1120 Ssu-Chr6 18313430 18316932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1120 70 547 Eukaryotic Initiation Factors Gene Family AT5G38640 66.942 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1120 K03680 - gmx:100795256 894.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1968 1 55362383 55367499 Ssu6g1120 6 18313430 18316932 ECH
Ssu6g1120 6 18313430 18316932 Ssu6g1120 6 18313430 18316932 ECH