Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1112 ATGTATTCCTCAAATACCTCCCTCAACAGCAATGACCTAATCTCGTACCCTAACCAAGCATTTTGCTTTAGGCCTTTTTCCTTTGAAAGCAACCCAACTAATTCTACAAAAGAAGCAGCCAACTCCAATTACGCCctccctcctcctcctcctcctttgtCCTTTTTCCAATCTCCCTATGAAGAAAATATCTTCCTCGAACATCACCATGACTTGCTCTTACTTCACCAATCTCTAGCTGACCCTGGACTCGCCAAAAACCTTGACGTTGTGGCCGAAATCTCACCAATTCCTTGCCCCGGACACGGCGCCACCACGATGAAGCACACTCCAAGAAAGAGATCCAGCAAGAGAGACCGCCATAGTAAGATCAACACAGCACGAGGACTCAGGGACCGAAGAATGAGGTTGTCCCTAGAAGTTGCGAAGAGGTTTTTCGGGTTGCAAGACATGCTAGGCTTTGACAAGGCCAGCAAAACCGTGGATTGGTTACTAAACCAGGCAAAGGTTGAAATCAAACAACTTGCAAGAGAGAAAAGCAGTGTTATTGGTGGCGCCAAGAGTGCATCATCAACTTCGGAATGCGAAGGGGTGTCTAGCTTGGACGAGGTTGTAGTGAGTGGAGTACTTAATAATGAGGAGCAAGCGAGGGAGCCACACGTGAAGAGAAGAACAAGTAAGGTTTGTAGAAAGAGTGCATTCAATCCTATTGATAAGGAATCGAGGGAAAAGGCAAGAGAAAGAGCGAGGGAAAGAACAAGAGAGAAGATGAGGACTCGGAGGCTAGCTGATGCGTCAAACCTGAACCGTTTGAGTTCTTGGAACCCCTTTGAAACGGTTGAAGACTCTGCGTGTACTCAGAGCCAAAGCGTGAATCATCCCTCCTTGGATGTGCACCTAACGGAGGCTGAAGAACCAAGTTCTCACGCAAAGGAGCATTTGGGCCAAGTAGAGGACATGGCGCATGAAGATAATTCTTTGGTGATCATGAGCAAGTGGAGCCCAACTATGATGTTCAATTCTCTGAACAGCTCCGGAATCCTTCAGGAACATCAATTTGCAGAATTTCAGTCCTTGGGAAAACCTTGGGAAGCCTACAACAATCACATCTAA 1113 0.4555 MYSSNTSLNSNDLISYPNQAFCFRPFSFESNPTNSTKEAANSNYALPPPPPPLSFFQSPYEENIFLEHHHDLLLLHQSLADPGLAKNLDVVAEISPIPCPGHGATTMKHTPRKRSSKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKVEIKQLAREKSSVIGGAKSASSTSECEGVSSLDEVVVSGVLNNEEQAREPHVKRRTSKVCRKSAFNPIDKESREKARERARERTREKMRTRRLADASNLNRLSSWNPFETVEDSACTQSQSVNHPSLDVHLTEAEEPSSHAKEHLGQVEDMAHEDNSLVIMSKWSPTMMFNSLNSSGILQEHQFAEFQSLGKPWEAYNNHI 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1112 370 ProSiteProfiles TCP domain profile. 117 175 IPR017887 -
Ssu6g1112 370 MobiDBLite consensus disorder prediction 107 121 - -
Ssu6g1112 370 MobiDBLite consensus disorder prediction 101 124 - -
Ssu6g1112 370 ProSiteProfiles R domain profile. 239 256 IPR017888 -
Ssu6g1112 370 Pfam TCP family transcription factor 116 259 IPR017887 -
Ssu6g1112 370 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 97 341 IPR005333 GO:0003700
Ssu6g1112 370 PANTHER TRANSCRIPTION FACTOR TCP18 97 341 - -
Ssu6g1112 370 MobiDBLite consensus disorder prediction 234 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1112 Ssu-Chr6 18183512 18184921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1112 113 253 TCP Transcription Factor Family AT3G18550 44.720 2.24e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu6g1112 TCP 5.4e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1112 - - gmx:100803669 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1962 1 54980013 54981574 Ssu6g1112 6 18183512 18184921 ECH
Ssu3g0250 3 4551076 4552286 Ssu6g1112 6 18183512 18184921 ECH
Ssu8g2093 8 54926793 54928125 Ssu6g1112 6 18183512 18184921 ECH
Ssu6g1112 6 18183512 18184921 Ssu6g1112 6 18183512 18184921 ECH