Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1110 ATGAGCTGGCGCAGGGTATTGAAGTCAGCGCAGGCCCTCGCTTCGCACACTTTTCTCTTGTGCTTCACTCTCTTCCTCGTTCTCAAGCTCGATCACCGTCTCTCTTGTTCTTGGTGGATAATATTTTTACCTCTTTGGATGTTCCATGGTGTTGTGGCTCGAGGAAGGTTTTCATTACCTGCGCCATCTGCTCCACGTAATCGAAATTGGGCACCATGCCATGCCGTCGTTGCAACGCCATTGCTTATTGCATTTGAATTGCTCCTTTGTATATATCTTGAGAGCTTATATGTTCGTGGCTTTGCAGCAGTTGATCTAAAGATAGTGTTTCTTCCCTTACTAacatttgaaatcattattctCATTGACAATTTCAGGATGTGTAAGGCTCTAATGCCAGGAGATGAAGAAAACATGAGTGATGAGGCAATATGGGAAACTCTTCCTcacTTTTGGGTTGCAATCTCTATGGTGTTCTTCATTGCTGCTACAGTCTTCACACTCCTAAAACTGAGCGGTGATGTAGGTGCTCTGGGCTGGTGGGACTTGTTTATTAACTTTGCTATTGCCGAGTGCTTTGCTTTCCTTGTATGTACAAAGTGGTCCAATCCAGTCATTCATAGAAATTCAAGAGAAGCCAGTAGTTCATCTTCAACTACAATTAGATATCTTGACTGGAACAGTGGTTTAGTGGTTTCTACAGAGGAAAATCAAGGGAGAATGTGTAGCCTGCAAGACATAGGAGGTCATTTCATGAAAGTACCAATTATTGTATTCCAGGTTCTTCTTTGTATGCGTCTAGAGGGAACACCTGCTTGTGCTGTATATATACCTCTTCCAGTTCTTTTCTCTCCCCTTTTCCTACTGCAAGGAGCTGGTGTACTGTTATCTGCATCTAAATTAGTGGAGAAACTTGTGCTTCTGCTACGAAGTGGAGCTGGTGGAggaatatattttagattttcttCAAGAGCTCATGATTGCTTGGGGTTCTTGCACCATGGTTCTAGATTATTAGGTTGGTGGTCAATTGATGAAGGGAGTCGGGAAGAACAAGCACGACTATACCATGAGGGAGCATCTGGGTATAATACGTTCTGTGGTTATCCTCCTGACATTGTTAAGAAAATGCCAAAAAAGGAACTTGCTGAGGAGGTTTGGAGACTCCAGGCAGCTCTTGGTGAACAAACTGAAATTACAAAATACAGCCAACAGGAGTATGAAAGACTTCAAAATGAGAAAGTGTTGTGCAGAATTTGTTTTGAGGGAGAGATTAATGTTGTATTGCTCCCATGTAGGCATCGTGTCCTTTGCAGGTGA 1320 0.4189 MSWRRVLKSAQALASHTFLLCFTLFLVLKLDHRLSCSWWIIFLPLWMFHGVVARGRFSLPAPSAPRNRNWAPCHAVVATPLLIAFELLLCIYLESLYVRGFAAVDLKIVFLPLLTFEIIILIDNFRMCKALMPGDEENMSDEAIWETLPHFWVAISMVFFIAATVFTLLKLSGDVGALGWWDLFINFAIAECFAFLVCTKWSNPVIHRNSREASSSSSTTIRYLDWNSGLVVSTEENQGRMCSLQDIGGHFMKVPIIVFQVLLCMRLEGTPACAVYIPLPVLFSPLFLLQGAGVLLSASKLVEKLVLLLRSGAGGGIYFRFSSRAHDCLGFLHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFCGYPPDIVKKMPKKELAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRICFEGEINVVLLPCRHRVLCR 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1110 439 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 439 - -
Ssu6g1110 439 Pfam Transmembrane Fragile-X-F protein 28 289 IPR019396 -
Ssu6g1110 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 439 IPR013083 -
Ssu6g1110 439 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1110 Ssu-Chr6 18131884 18139498 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1110 1 439 C3H Transcription Factor Family AT1G73950 72.955 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1110 - - gmx:100791390 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1110 6 18131884 18139498 Ssu6g1110 6 18131884 18139498 ECH