Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1108 ATGTCATCAAGTGGAACCATTTGGAGCTATGAGGAAGAAAAGGCATTTGAGAATGCCATCGCTATGCATTGGATTGAGGAAGCCTCAAAAGAGCAATGGGAGAAAATTGCTTCAGCAGTTCCCAGCAAAAGCATGGAAGAAGTGAAGCAACATTACCAGGTTCTAGTAGAGGATGTAATTGCAATTGAGGCAGGTCATATATCATTCCCAAACTATGCTTCTGAGGAAACCACATCTTCAAATAAAGACTTCCATGGCTCTTCCAAGGCCACAACTTCAGATAAAAGATCGAATTGTAATTATGGAAGTGGCTTTTCTGGGCTAGGACATGACTCCACCACTCATAGTGGTAAAGGAGGCTTGTCAAGGTCATCAGAAcaagaaaggagaaaaggaaTTCCATGGACTGAGGAGGAGCACAGgTTATTTTTACTTGGTCTAGACAAGTTTGGAAAAGGAGATTGGAGAAGCATTTCAAGGAACTTTGTGATTTCTAGGACTCCTACTCAAGTGGCTAGCCATGCACAGAAGTACTTCATCAGGTTGAATTCTATGAATAGAGACAGGAGGAGGTCTAGTATCCATGATATTACTAGTGTGAACAATGGAGATGTGGCTAGTAATCAAGCACCAATTACAGGGCAGCATAGTAGCACAATTTCTTCAAGTACAATGGGTGTAGGAGGACAATCACTGAAGCATAGAGTTCAGGGTCATATACCAGCTGGTTTAGGCATGTATGGAACACCAGTTGGGCATCCTGTGGCTGCTCCTCCAGGGCATATGGCGTCTGCTGTTGGCACTCCTGTCATGCTTCCTCATGGACCCCACCCCCATCCTCATCCACCTTATGTTCTCCCTCTTGCTTACCCTATGGCACCTCCAACAATGCACCAATAA 900 0.4344 MSSSGTIWSYEEEKAFENAIAMHWIEEASKEQWEKIASAVPSKSMEEVKQHYQVLVEDVIAIEAGHISFPNYASEETTSSNKDFHGSSKATTSDKRSNCNYGSGFSGLGHDSTTHSGKGGLSRSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVASNQAPITGQHSSTISSSTMGVGGQSLKHRVQGHIPAGLGMYGTPVGHPVAAPPGHMASAVGTPVMLPHGPHPHPHPPYVLPLAYPMAPPTMHQ 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1108 299 Gene3D - 133 185 - -
Ssu6g1108 299 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 131 181 IPR006447 GO:0003677
Ssu6g1108 299 ProSiteProfiles SANT domain profile. 3 52 IPR017884 -
Ssu6g1108 299 PANTHER TRANSCRIPTION FACTOR MYBS1 1 298 - -
Ssu6g1108 299 MobiDBLite consensus disorder prediction 75 133 - -
Ssu6g1108 299 CDD SANT 8 56 IPR001005 -
Ssu6g1108 299 CDD SANT 134 179 IPR001005 -
Ssu6g1108 299 ProSiteProfiles Myb-like domain profile. 127 179 IPR001005 -
Ssu6g1108 299 PANTHER TRANSCRIPTION FACTOR KUA1 1 298 - -
Ssu6g1108 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 183 IPR017930 -
Ssu6g1108 299 SMART sant 4 58 IPR001005 -
Ssu6g1108 299 SMART sant 131 181 IPR001005 -
Ssu6g1108 299 ProSiteProfiles SANT domain profile. 135 183 IPR017884 -
Ssu6g1108 299 MobiDBLite consensus disorder prediction 75 121 - -
Ssu6g1108 299 SUPERFAMILY Homeodomain-like 129 184 IPR009057 -
Ssu6g1108 299 Gene3D - 1 69 - -
Ssu6g1108 299 MobiDBLite consensus disorder prediction 199 229 - -
Ssu6g1108 299 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Ssu6g1108 299 Pfam Myb-like DNA-binding domain 134 179 IPR001005 -
Ssu6g1108 299 SUPERFAMILY Homeodomain-like 8 61 IPR009057 -
Ssu6g1108 299 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1108 Ssu-Chr6 18119276 18120397 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu6g1108 Myb_DNA-binding 1.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1108 - - gmx:100812196 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1108 6 18119276 18120397 Ssu6g1108 6 18119276 18120397 ECH