Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1093 ATGTCTCATCCCAACTGGGAAGCCGATAAAATGTTAGATGTGTATATTTACGATTATCTCATGAAGAGACAATTACATGCTTCTGCAAGAATATTTCAGGCTGAAGGAAATGTTTCAACGGATCCTGTTGTTATAGATGCACCTAGTGGTTTTCTCTTTGAGTGGTGGTCTGTCTTCTGGGACATATATATTGCCAGGGCAAGTCAGAAGCACTCAGAAGCAGCAGCTTCATCTTACAGCAAgAGTCAACAAATTAAGGCTCGGGTAATGCAGAAGCAACAAGAGCAAGAGCTTCAGAACACAAACCAGAATCAACAAATGCAAATGCAACTCTTATTGCAAAGACATGCTCAGCAGCAGCAACGTCTGGGTGGAACTCAACTTATTGGTGGCAGTGCTAGCTGTCCTATTGGCAATGATCCTTTGATGAGGCAGAACCGGGCAACAAAAACATATGAGGACAGGTTGAAGCTTCCACTTCAGAGAGATGCTTTAGATGATGCAAGCGTTAAGCAAAATGTAGCCGATGATATTGGTCAGCTTCTAAACCCCAACCATGCCATATTGTTGaaagcagcagcagcagcaactGGTGAACAGGCTACAGGTTGTCAAATTTCTGTTTGCAGACAGACATTGCTCAGTGCATCTAGCGTGTTACAGGGGAATATTCAACATGTTCAAAATCTGAACCAGAAACTTCCAGGGTCTACACAAGACATAAAGAGTGATATGAATGCAATGATGAGTTCTCAAGCTGTTGTTTCAGAAGGATCTTTCATTGGTTGTCATGgTTCAAATCAAGGTGGTAGCAATTTGACTCTGAAAGGATGGCCTCTAGCAgGACTGGATCAGCTTCGTTCAGGATTTCTCCAGCCGAATAATTTGATGCAGTCTCCACAATCTTTCAATCAACTTTCTCTACGGCAGCAACTTATGCTTCAGGCACAGCAAAATTTGATGTCTCCTTCTGCCAGTGATTCTGAAAGCAGAAGACTCAGGATGCTTttcaataatcaaaacatgGGTCTTGCGAAAGATGGGCAATCAAATTCTGTAGGTGATTTAATTCCGAATAATGGATCACCTGCACAAGTTGGTTCCTCAATGTTGCCCCATCCAGACTCGGATATGTTCCTTAAGCAACAAATTCAAAAGAGTAGTCAGCAGCTTCAACAATATTCACAGCATCCTCTTTCAAGCCAGCAATCTGAGAGTCTCCAGCAGCAAGAAAAAATTGGTCCTGGAAGCATGACAGTAGAGGGCAATGTGTCCAATACCTTACAAGGAAACGACCAGGCTTCCAAAAGTAAAACAGGGCGAAAGCGAAAGCCAGCATCATCTTCAGGTCCTGCCAATAGCTCTGGAACTGCAAACACCACAGGACCACCTACCAGTTCACCTTCATCACCATCTACACAAACACCTGGAGACATGATGAATGTGTCAACTCTGCAACAGAATGTTCCTTCCTCTAAGTCATCATTTATGTTTGGTACTGATGCTTTGGGCTCACTTACATCAGCTCAGAATCAATTGGCTGATATGGATCACCTTGTGGGTGATGGATGTTTGGGTGACAATGTTGAGTCATTCTTATCTCCTGATGATACAGACGTTAGAGAAAAAGTTGGCAAAGGATTCTCATTCAAGGAGATCAAGCATATAATGGCAAGTTCACATAAAGTTGAGTGTTGTCACTTCTCATCAGATGGTAAACTTCTTGCTACAGGTGGCCATGATAACAAGGCTTCTTTGTGGTGCACAGAATTGTTTAACCTGCAAATTACACTTGAAGAGCACAGTGAATGGATAACTGATGTTCGATTTTGTCCAAGCATGTTGCGTGTTGCTACATCCTCAGCAGACAAAACTGTTAGGGTTTGGGATGTTGATAATCCAGGTTATTCTCTTCGAACATTCACAGGACATGCAACAACTGTGATGTCACTAGATTTTCACCCTAGTAAAGATGACCTTATTTGCTCTTGTGACAATAGTGAGATAAGATACTGGAGTATTAAAAATGGTAGTTGTACTGGGGTTTTCAAGGGTGGTGCATCTCAGATGAGATTTCAACCTTGTTTGGGAAGGCTTCTTGCAGCTGCGGTAGACAATCACATATCCATTTTTGATGTAGAAACCCTGGGTTGCAAACTTAAGTTGCAGGGCCATAATAATCTTGTCCGTTCTGTGTGCTGGGATTTGTCTGGAAAATATCTGGCTTCTCTTAGTCATGATCTGGTTAGGGTATGGACTGTTGGATCTGGTGGCAAAGGGGAATGCATTCACGAGTTGAACGCATCTGGGATCAAATTCAACACCTGTGTTTTCCATCCCTTCTATCCTTTGCTGGTCATTGGCTGCCACGAGACACTTGAGCTGTGGGACTTCGGTGAGAACAAGACATTGACTCTGCATGCACATGACAAGGTTGTATCTTCCTTGGCAGTATCAAATGTTAATGGGTTGCTGGCTTCAACTAGTCATGACAAGCATTTCAAGATCTGGAAGTGA 2517 0.4207 MSHPNWEADKMLDVYIYDYLMKRQLHASARIFQAEGNVSTDPVVIDAPSGFLFEWWSVFWDIYIARASQKHSEAAASSYSKSQQIKARVMQKQQEQELQNTNQNQQMQMQLLLQRHAQQQQRLGGTQLIGGSASCPIGNDPLMRQNRATKTYEDRLKLPLQRDALDDASVKQNVADDIGQLLNPNHAILLKAAAAATGEQATGCQISVCRQTLLSASSVLQGNIQHVQNLNQKLPGSTQDIKSDMNAMMSSQAVVSEGSFIGCHGSNQGGSNLTLKGWPLAGLDQLRSGFLQPNNLMQSPQSFNQLSLRQQLMLQAQQNLMSPSASDSESRRLRMLFNNQNMGLAKDGQSNSVGDLIPNNGSPAQVGSSMLPHPDSDMFLKQQIQKSSQQLQQYSQHPLSSQQSESLQQQEKIGPGSMTVEGNVSNTLQGNDQASKSKTGRKRKPASSSGPANSSGTANTTGPPTSSPSSPSTQTPGDMMNVSTLQQNVPSSKSSFMFGTDALGSLTSAQNQLADMDHLVGDGCLGDNVESFLSPDDTDVREKVGKGFSFKEIKHIMASSHKVECCHFSSDGKLLATGGHDNKASLWCTELFNLQITLEEHSEWITDVRFCPSMLRVATSSADKTVRVWDVDNPGYSLRTFTGHATTVMSLDFHPSKDDLICSCDNSEIRYWSIKNGSCTGVFKGGASQMRFQPCLGRLLAAAVDNHISIFDVETLGCKLKLQGHNNLVRSVCWDLSGKYLASLSHDLVRVWTVGSGGKGECIHELNASGIKFNTCVFHPFYPLLVIGCHETLELWDFGENKTLTLHAHDKVVSSLAVSNVNGLLASTSHDKHFKIWK 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1093 838 Gene3D - 688 838 IPR015943 GO:0005515
Ssu6g1093 838 ProSiteProfiles Trp-Asp (WD) repeats profile. 598 633 IPR001680 GO:0005515
Ssu6g1093 838 MobiDBLite consensus disorder prediction 444 481 - -
Ssu6g1093 838 Pfam WD domain, G-beta repeat 718 752 IPR001680 GO:0005515
Ssu6g1093 838 Pfam WD domain, G-beta repeat 593 630 IPR001680 GO:0005515
Ssu6g1093 838 Pfam WD domain, G-beta repeat 802 838 IPR001680 GO:0005515
Ssu6g1093 838 Pfam WD domain, G-beta repeat 637 673 IPR001680 GO:0005515
Ssu6g1093 838 Pfam WD domain, G-beta repeat 559 587 IPR001680 GO:0005515
Ssu6g1093 838 ProSiteProfiles Trp-Asp (WD) repeats profile. 806 838 IPR001680 GO:0005515
Ssu6g1093 838 MobiDBLite consensus disorder prediction 343 481 - -
Ssu6g1093 838 SUPERFAMILY WD40 repeat-like 561 838 IPR036322 GO:0005515
Ssu6g1093 838 Gene3D - 540 687 IPR015943 GO:0005515
Ssu6g1093 838 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 641 678 - -
Ssu6g1093 838 MobiDBLite consensus disorder prediction 380 435 - -
Ssu6g1093 838 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Ssu6g1093 838 CDD WD40 552 838 - -
Ssu6g1093 838 PANTHER LISH-SSDP-WD40 3 838 - -
Ssu6g1093 838 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 598 633 - -
Ssu6g1093 838 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 3 838 IPR044716 GO:0003714
Ssu6g1093 838 Coils Coil 95 122 - -
Ssu6g1093 838 Pfam LisH 10 36 IPR006594 GO:0005515
Ssu6g1093 838 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 806 838 - -
Ssu6g1093 838 ProSiteProfiles Trp-Asp (WD) repeats profile. 556 587 IPR001680 GO:0005515
Ssu6g1093 838 ProSitePatterns Trp-Asp (WD) repeats signature. 617 631 IPR019775 -
Ssu6g1093 838 ProSiteProfiles Trp-Asp (WD) repeats profile. 641 682 IPR001680 GO:0005515
Ssu6g1093 838 MobiDBLite consensus disorder prediction 343 369 - -
Ssu6g1093 838 SMART WD40_4 715 753 IPR001680 GO:0005515
Ssu6g1093 838 SMART WD40_4 634 673 IPR001680 GO:0005515
Ssu6g1093 838 SMART WD40_4 549 588 IPR001680 GO:0005515
Ssu6g1093 838 SMART WD40_4 799 838 IPR001680 GO:0005515
Ssu6g1093 838 SMART WD40_4 676 712 IPR001680 GO:0005515
Ssu6g1093 838 SMART WD40_4 759 797 IPR001680 GO:0005515
Ssu6g1093 838 SMART WD40_4 591 630 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1093 Ssu-Chr6 17825209 17836701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1093 635 837 Miscellaneous Gene Families AT5G08390 25.714 8.10e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Ssu6g1093 WD40 0.0089 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1093 - - gmx:100801265 1306.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1093 6 17825209 17836701 Ssu6g1093 6 17825209 17836701 ECH