Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1091 ATGGCGCTGCTCATCCTGGTGTTCCTCCTGCAGCTGAGTTTTCACGTCCCAGTCAACTCGGAGCCGACTCAGGACAAGCAAGCGCTCCTTGCTTTCCTCTCCAAAACCCCGCACTCCAACCGCCTCCAATGGAACGCTTCCGCCTCCGCCTGCGACTGGGTGGGCGTCAAATGCGACGCTTCACGCGCCTTCGTGTACTCGCTCCGTTTGCCAGCCGTGGGCCTCGTGGGTCGGGTCCCACCCGACACAATCGGCCGCCTCGCCCAGCTTCGGATCCTCAGTCTCCGCTCCAACGGACTCGCCGGCGAGATCCCCGCCGATTTCTCCAACCTAACCTTCCTCCGCAGCCTCTACCTTCAAAAGAACCAATTCTCCGGCGAGTTCCCGCCGAGTCTGACTCGCCTCACTCGGTTAACCCGCTTGGATCTCTCCTCCAACAACTTCTCTGGCCCAATCCCCTTCTCCGTCAACAACCTAACCCACCTCACCGGCCTCTTCCTGGAGAACAACACCTTCTCCGGTAAAATCCCAAGCATCGCCGCCAAGCTGGTTGACTTCGACGTTTCCTATAACCGCCTCAACGGTTCCATCCCCGAAACGCTGTCCAGATTCCCCGAATCCTCATTCGCCGGGAACATAGATCTCTGCGGGCCGCCGCTGAAGGCGTGCAACCCGTTCTTCCCGGCGCCGGCGCCGTCTCCGTCGTCGAATTCAAACCCAAGCCCGCCGCACAAGAAGTCCAAGAAGCTCTCCACCGGCGCCATTGTCGCAATTGTTGTGGGGTCTGTTTTGGCGGCGGCGTTGTTGCTGTTGCTGCTTTTGCTCTGTCtccggcggcggcggcggaggcAGCCCGCGAAGCAGCCGAAGCCGGTGGCGGCGGTGGCGCGTGGGCCGCCGGCGGAGGCGGGGACGTCGTCGTCGAAGGAGGACATCACCGGGGGTTCCGCCGAGGCGGAGAGGAACAAGCTTGTGTTCTTTGATGGGGGAATATATAGTTTCGATTTGGAGGATTTGTTGAGGGCTTCGGCGGAGGTGTTGGGGAAAGGGAGCGTGGGGACCTCGTACAAGGCGGTGCTGGAAGAAGGGACCACGGTGGTGGTGAAGAGGTTGAAGGATGTTGTGGTGACGAAGAAAGAGTTCGAGATGCAAATGGAGGTTCTCGGGAAGATCAAGCACGAGAATGTGGTTCCTCTCAGAGCCTTTTACTTCTCCAAGGACGAGAAATTGCTCGTTTACGATTACATGTCCGCTGGTAGCTTGTCTGCTCTGCTACACGGGAGCAGAGGGTCTGGGCGAACACCACTAGACTGGGACAGCCGGATGAGAATAGCACTAGGAGCCGCAAGAGGGCTGGCATGCCTCCACGTGTCAGGCAAGGTGGTCCACGGCAACATCAAATCCTCCAACATCCTCCTCCGCGGACCGGACCACGATGCCGGCGTTTCGGACTTTGGCCTCAACCCCTTGTTCGGAAACGGAGCCCCGTCGAACCGGGTCGCGGGTTACCGGGCACCCGAAGTCGTTGAAACCCGAAAAGGGAGCTTCAAGTCTGACGTGTACAGCTTCGGCGTGTTGCTGTTGGAGCTACTAACGGGGAAAGCGCCGAACCAAGCCTCGCTCGGCGAAGAGGGCATCGACCTCCCCAGGTGGGTCCAGTCCGTGGTGCGAGAAGAGTGGACCGCGGAGGTGTTCGACGCGGAACTCATGAGGTTCCACAACATCGAGGAGGAGATGGTTCAGCTCTTGCAAATCGCGATGGCTTGCGTTTCGGTGGTGCCCGATCAGAGGCCCAACATGCAGGACGTGGTGCGCATGATTGAGGACATTAATCGGGGCGAGACCGATGACGGTTTGCGCCAGTCCTCTGATGATCCTTCCAAAGGATCCGAGGGTCATACGCCTCCCCCGGAGTCAAGGACTCCACCTAGGTCACTCACACCGTAA 1947 0.5881 MALLILVFLLQLSFHVPVNSEPTQDKQALLAFLSKTPHSNRLQWNASASACDWVGVKCDASRAFVYSLRLPAVGLVGRVPPDTIGRLAQLRILSLRSNGLAGEIPADFSNLTFLRSLYLQKNQFSGEFPPSLTRLTRLTRLDLSSNNFSGPIPFSVNNLTHLTGLFLENNTFSGKIPSIAAKLVDFDVSYNRLNGSIPETLSRFPESSFAGNIDLCGPPLKACNPFFPAPAPSPSSNSNPSPPHKKSKKLSTGAIVAIVVGSVLAAALLLLLLLLCLRRRRRRQPAKQPKPVAAVARGPPAEAGTSSSKEDITGGSAEAERNKLVFFDGGIYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFEMQMEVLGKIKHENVVPLRAFYFSKDEKLLVYDYMSAGSLSALLHGSRGSGRTPLDWDSRMRIALGAARGLACLHVSGKVVHGNIKSSNILLRGPDHDAGVSDFGLNPLFGNGAPSNRVAGYRAPEVVETRKGSFKSDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDAELMRFHNIEEEMVQLLQIAMACVSVVPDQRPNMQDVVRMIEDINRGETDDGLRQSSDDPSKGSEGHTPPPESRTPPRSLTP 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1091 648 PANTHER OS05G0480400 PROTEIN 13 628 - -
Ssu6g1091 648 Pfam Leucine rich repeat N-terminal domain 23 59 IPR013210 -
Ssu6g1091 648 MobiDBLite consensus disorder prediction 610 627 - -
Ssu6g1091 648 Gene3D Phosphorylase Kinase; domain 1 308 415 - -
Ssu6g1091 648 Gene3D Transferase(Phosphotransferase) domain 1 416 628 - -
Ssu6g1091 648 Pfam Protein kinase domain 344 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1091 648 ProSiteProfiles Protein kinase domain profile. 341 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1091 648 PANTHER OS05G0588300 PROTEIN 13 628 - -
Ssu6g1091 648 SUPERFAMILY Protein kinase-like (PK-like) 345 607 IPR011009 -
Ssu6g1091 648 MobiDBLite consensus disorder prediction 286 314 - -
Ssu6g1091 648 Gene3D Ribonuclease Inhibitor 183 223 IPR032675 -
Ssu6g1091 648 Gene3D Ribonuclease Inhibitor 22 181 IPR032675 -
Ssu6g1091 648 CDD STKc_IRAK 347 610 - -
Ssu6g1091 648 MobiDBLite consensus disorder prediction 227 247 - -
Ssu6g1091 648 SUPERFAMILY L domain-like 24 204 - -
Ssu6g1091 648 MobiDBLite consensus disorder prediction 610 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1091 Ssu-Chr6 17756973 17760037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1091 25 628 Receptor kinase-like Gene Family AT5G58300 53.997 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu6g1091 Pkinase 1.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1091 - - gmx:100806857 1016.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1091 6 17756973 17760037 Ssu6g1091 6 17756973 17760037 ECH