Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1090 ATGGCATCACCATCCGAACTAAGTCTGGATTGCAAGCCCCAAAGCTATTCCTTGCTACTCAAATCATTTGGAGATCAAACTGATCAGACCTACAAGCTTGAAGAATTCCTCTCTCGCTTAGAGGAAGAACGTCTCAAGATTGATGCCTTCAAGCGAGAGCTTCCTCTCTGCATGCAACTTCTCATCAACGCCATGGAGGCTTCAAGGCAGCAACTTCAGGCCTTTAAAGTAAACCATAGCACAAAGCCGGTTCTCGAAGAATTCATACCCATGAAGCACTTCGCCTCAGAAAGCTCTGAGAAGGCAACAAACCTATCTGACAAGGCAAATTGGATGACATCTGCCCAACTGTGGAGTCAAGCAAGCGAAGGAACCAAACAACAACCAACAATCACATCGCCAAAAGAAGCTGATATAGGCTTCAGCATCAGCCCCAAGCTGGCTCTAGACAACAAACAGAGGAACGGTGGCGGAGCCTTCCTCCCATTCTCAAGAGAGAGAAACTCCTGCCAAGGCTCTACATTGCGGCCCCTCCCTGAACTAGCCCTTGCCTCTGCAGAGAAAGAAATGGAGGACAAGAAACGTGCAGAGGTAGAAAAGGGTGTTTCATGTCAGAATAAAAAGGAGAATTCAGGAAGTGATGGAGCTGTGGTTGATCAAGGAAAAGGAGGTAGTCCAGTTGCATCATCTCATGCACAAACAACCACAACCACTACCCAAACTCATAGGAAAGCAAGAAGGTGTTGGTCACCAGACCTGCACCGTAGATTTGTTAATGCTCTTCAAATGCTTGGTGGATCACAAGTGGCGACCCCAAAGCAGATAAGGGAGCTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATCTGCAGAAATATAGGCTTCACACTAGAAGACCCAGTCCAAGTCCTCAAACGGGTGCAGCAGCACCGCAGCTTGTGGTCCTCGGAGGAATCTGGGTCCCACCGGAATATGCCACGGCGGCGACACATTCAGCCGCCCCTACCCTCTACAGCGCCCACCCTTCCTCTCACGCGCCACCGCCACACTACTGCGCTGCCACTCCCGTGCCGCAAGAGTTCTACACTGCTGCGCCGCCGCAGCCGCTGCttccgccgccgccgccgcacCACAACGCACTCCACCACTTGCACATGTACAAGGCGGCGCCCCACGGGCACGGCTCGCCGGAATCCGACGTTCCGGGCGGCGGGGGGCGGTCGGAGAGCATCGAGGACAGGAACTCGGAGAGTAGCAGCTGGAAGGGGGAGAGTGGGGAGAACGAAGGGGAGAGGAAAGGGTTGGGCGAGGAGAGCAATGGGAGTGAGATCACTCTCAAATTCTAG 1356 0.5177 MASPSELSLDCKPQSYSLLLKSFGDQTDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLINAMEASRQQLQAFKVNHSTKPVLEEFIPMKHFASESSEKATNLSDKANWMTSAQLWSQASEGTKQQPTITSPKEADIGFSISPKLALDNKQRNGGGAFLPFSRERNSCQGSTLRPLPELALASAEKEMEDKKRAEVEKGVSCQNKKENSGSDGAVVDQGKGGSPVASSHAQTTTTTTQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQTGAAAPQLVVLGGIWVPPEYATAATHSAAPTLYSAHPSSHAPPPHYCAATPVPQEFYTAAPPQPLLPPPPPHHNALHHLHMYKAAPHGHGSPESDVPGGGGRSESIEDRNSESSSWKGESGENEGERKGLGEESNGSEITLKF 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1090 451 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 451 - -
Ssu6g1090 451 Coils Coil 33 53 - -
Ssu6g1090 451 Gene3D - 243 301 - -
Ssu6g1090 451 MobiDBLite consensus disorder prediction 392 451 - -
Ssu6g1090 451 Pfam Myb-like DNA-binding domain 246 297 IPR001005 -
Ssu6g1090 451 MobiDBLite consensus disorder prediction 413 441 - -
Ssu6g1090 451 MobiDBLite consensus disorder prediction 186 246 - -
Ssu6g1090 451 MobiDBLite consensus disorder prediction 226 244 - -
Ssu6g1090 451 MobiDBLite consensus disorder prediction 186 204 - -
Ssu6g1090 451 SUPERFAMILY Homeodomain-like 241 302 IPR009057 -
Ssu6g1090 451 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 241 301 IPR017930 -
Ssu6g1090 451 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 244 299 IPR006447 GO:0003677
Ssu6g1090 451 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 451 IPR044787 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1090 Ssu-Chr6 17714104 17716731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1090 1 451 G2-like Transcription Factor Family AT2G03500 50.207 1.96e-130 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu6g1090 Myb_DNA-binding 9.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1090 - - gmx:100807925 787.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1090 6 17714104 17716731 Ssu6g1090 6 17714104 17716731 ECH
Ssu6g1090 6 17714104 17716731 Ssu1g1948 1 54589211 54591761 PCT