Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1089 ATGACGATGGACGACGATAGCTCCATATATGTAGGGGGTCTTCCCTACGACGCCACCGAAGAAACCATTCGCACCGTCTTCAATTTGTATGGCGCCATCCTTGATGTCAAGatTATCAACGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTTACTTTCACAAATCCTAGGTCAGCAATAGATGCCATCAACGACATGAATGGCAGAACCATTGACGGGCGTGTGGTTAAAGTTAATGGGGTGAGGGCTCGTGGGGGCAGGTCAAATTTTGGCAGAGAacgttattattatcataatgaTGAGAGGAATGGAGATTGGGATCGCGGTAGAGATCGAGACCGGGATTATGATcatgataataatgatagggATGGATATAGGACTCGGAGCAGTGATTGGACTCGCGACCGTGATAGGTCTCGAGACCATGAGCAGGACAGGGATAGAAGATTTGAGCATATGCATGATTATGATCAAGCTAGAGAACCTATGTTAGATAATGACTGGAGTCGAGAGGATGACAGAGTTGAAAATGAACAAGAACACAGCAGGGGGCATGGTGGAGATCTGGATAGAGACCACAACTTTGATTTGGATATAAACAGGAAAATGGATAGGACCAGTGATCCTGATAGAAGTTTTGATGAGGATAGAAAAGATCAGTCAAGGAGAAACAATGATTTGAATGTTATAAATCAACACAGCATGGATCTTTCATCAGATTCAACTGGTACTGACAGTGATCAGGTAGAAGCTCAATTAGACAGGTCAACTCAAGAGCTTGATCAACTAAAAAAGGAGGTTTCTCAGATGGAAGAGGGATTGGAAGAGAAAAGACTCCATGTTAAGGAATTACAAAAGCAATCTAAGAAACTGGAGGATGCACTGATCAATGCCAAGAAAAACTCTTCGTATCATCAGATGCAGTTGATGAAGCTGCATAAATGTGTTCTGCAAGTGAAAGATTACACAGAAAGACTTAAAACTAGTGAAAAAGAACTTCAGGCTCTAATTCATACAGCAATGTCAGAGATTGATGGTGATGGTGTTGGATTAAAGGATGGACAACTAACAAATGGAAGTCTTGATGGTAGATAG 1101 0.4105 MTMDDDSSIYVGGLPYDATEETIRTVFNLYGAILDVKIINDQRTRGKCYCFVTFTNPRSAIDAINDMNGRTIDGRVVKVNGVRARGGRSNFGRERYYYHNDERNGDWDRGRDRDRDYDHDNNDRDGYRTRSSDWTRDRDRSRDHEQDRDRRFEHMHDYDQAREPMLDNDWSREDDRVENEQEHSRGHGGDLDRDHNFDLDINRKMDRTSDPDRSFDEDRKDQSRRNNDLNVINQHSMDLSSDSTGTDSDQVEAQLDRSTQELDQLKKEVSQMEEGLEEKRLHVKELQKQSKKLEDALINAKKNSSYHQMQLMKLHKCVLQVKDYTERLKTSEKELQALIHTAMSEIDGDGVGLKDGQLTNGSLDGR 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1089 366 CDD RRM_SF 9 80 - -
Ssu6g1089 366 MobiDBLite consensus disorder prediction 227 249 - -
Ssu6g1089 366 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 362 - -
Ssu6g1089 366 Coils Coil 248 303 - -
Ssu6g1089 366 SUPERFAMILY RNA-binding domain, RBD 4 112 IPR035979 GO:0003676
Ssu6g1089 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Ssu6g1089 366 SMART rrm1_1 8 80 IPR000504 GO:0003723
Ssu6g1089 366 MobiDBLite consensus disorder prediction 108 226 - -
Ssu6g1089 366 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 362 - -
Ssu6g1089 366 Coils Coil 321 341 - -
Ssu6g1089 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Ssu6g1089 366 Gene3D - 2 97 IPR012677 -
Ssu6g1089 366 MobiDBLite consensus disorder prediction 108 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1089 Ssu-Chr6 17705039 17708439 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1089 7 79 Eukaryotic Initiation Factors Gene Family AT2G36660 34.247 5.51e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1089 - - gmx:100816804 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1089 6 17705039 17708439 Ssu6g1089 6 17705039 17708439 ECH