LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu6g1081	ATGGACAAGAAAAAGGTGGCAGTTCCCCTCGTGTGCCACGGCCACTCTCGCCCCGTGGTTGATCTCTTCTACAGTCCTGTTACGCCTGATGGGTTTTTCCTTATCAGTGCAAGCAAGGATTCTAGTCCCATGCTCAGAAATGGAGAGACTGGAGACTGGATTGGAACATTTGAAGGGCACAAAGGTGCTGTTTGGAGTTGTTGCTTGGATACTAATGCCTTACGTGCTGCAACTGCTTCTGCTGATTTCTCAACGAAAGTTTGGGATGCTTTAACAGGAGATGAATTGCACTCTTTTGAGCATAAGCACATTGTTCGAGCATGTGCTTTTTCTGAGGATACTCACCTTTTGCTCACCGGGGGAGTTGAGAAAATTCTCCGGATCTATGATATGAATCGGCCTGATGCACCACCCAGAGAAGTGGACAAATCCCCTGGCTCTGTCAGAACTGTTGCCTGGCTTCATAGTGACCAGACAATATTGAGTTCTTGTACTGATATGGGAGGTGTTAGGTTATGGGATGTAAGAAGTGGTAAAATAGTCCAGACGCTTGAAACTAAGTCATCTGTGACAAGTGCTGAAGTGAGTCAGGATGGCCGTTATATTACAACTGCTGATGGTTCTACTGTAAAGTTTTGGGATGCAAATTACTATGGATTGGTGAAGAGCTATGATATGCCCTGCACTGTGGAATCAGTTTCACTGGAGCCTAAGTATGGGAACAAGTTCGTAGCTGGGGGAGAAGATATGTGGGTCCATGTTTTTGATTTCCATACAGGCAATGAGATTGCATGCAACAAGGGGCACCACGGTCCTGTCCACTGTGTTCGTTTTTCTCCTGGTGGAGAATCCTATGCCTCAGGATCTGAGGATGGAACCATCAGAATATGGCAGACTGGCCCATTGACTCTCGATGACACGGAGGCTTTGTCTGCAAATGGATCAATTGAAAAGGTGAAGGTAACTGCAGATGAGGTTTCACGCAAGATTGAAGGTTTTCATATTGCGGATGAGGGGAAATCTAAAGAAAAGGACGAGGCTGTGGAGGAATCAAGCTAA	1059	0.4608	MDKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAATASADFSTKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTGGVEKILRIYDMNRPDAPPREVDKSPGSVRTVAWLHSDQTILSSCTDMGGVRLWDVRSGKIVQTLETKSSVTSAEVSQDGRYITTADGSTVKFWDANYYGLVKSYDMPCTVESVSLEPKYGNKFVAGGEDMWVHVFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLTLDDTEALSANGSIEKVKVTADEVSRKIEGFHIADEGKSKEKDEAVEESS	352

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu6g1081	352	Gene3D	-	9	328	IPR015943	GO:0005515
	Ssu6g1081	352	Pfam	WD domain, G-beta repeat	179	214	IPR001680	GO:0005515
	Ssu6g1081	352	Pfam	WD domain, G-beta repeat	54	89	IPR001680	GO:0005515
	Ssu6g1081	352	Pfam	WD domain, G-beta repeat	94	130	IPR001680	GO:0005515
	Ssu6g1081	352	Pfam	WD domain, G-beta repeat	265	297	IPR001680	GO:0005515
	Ssu6g1081	352	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I	1	345	-	-
	Ssu6g1081	352	SUPERFAMILY	WD40 repeat-like	4	304	IPR036322	GO:0005515
	Ssu6g1081	352	SMART	WD40_4	92	130	IPR001680	GO:0005515
	Ssu6g1081	352	SMART	WD40_4	134	174	IPR001680	GO:0005515
	Ssu6g1081	352	SMART	WD40_4	177	214	IPR001680	GO:0005515
	Ssu6g1081	352	SMART	WD40_4	217	256	IPR001680	GO:0005515
	Ssu6g1081	352	SMART	WD40_4	259	298	IPR001680	GO:0005515
	Ssu6g1081	352	SMART	WD40_4	5	47	IPR001680	GO:0005515
	Ssu6g1081	352	SMART	WD40_4	50	89	IPR001680	GO:0005515
	Ssu6g1081	352	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	266	298	-	-
	Ssu6g1081	352	PANTHER	OS02G0205400 PROTEIN	1	345	-	-
	Ssu6g1081	352	ProSiteProfiles	Trp-Asp (WD) repeats profile.	266	298	IPR001680	GO:0005515
	Ssu6g1081	352	ProSiteProfiles	Trp-Asp (WD) repeats profile.	57	98	IPR001680	GO:0005515
	Ssu6g1081	352	CDD	WD40	14	298	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu6g1081	9	296	Eukaryotic Initiation Factors Gene Family	AT2G46290	28.528	1.16e-39	142

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu6g1081	K13137		-	gmx:100818422	711.449

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu6g1081	6	17593284	17598746	Ssu6g1081	6	17593284	17598746	ECH