Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1079 ATGAAGGGAGAAGTACAGCTTCAGCCTCCATCGGTTCTGCAAAGCCCTAGGGATTCCGACCCTTTACTCCATAATCAGGAGGAGGATGAATCACCGGGAAGCTCTGGTGAGATCAAGGATGAGGAAGACGTTGAGGCTGGCTCACTCCCCTGTTGTCGAATTTGCCTCGAAAGCGATTCCGACCCAGAGGATGAATTGATATCTCCATGCATGTGCAAAGGGACCCAACAGTTTGTCCATCGTTCATGTCTTGATCACTGGCGCTCAGTAAAGGAAGGGTTTGCTTTCTCACACTGCACCACCTGCAAGGCCCAATTTCATCTTAGAGTTGAATTGTTTGAGGACAACTCTTGGCGTAAAATAAAGTTCAGACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTCTGGCTGTACAAACTGTGATTGCAGCTATGGGTGGCTTTGCGTACATCATGGACAAAGATGGTTCCTTCAGGAACTCGTTTGATGATGGCTGGGATAGGATACTGTCAAAGCATCCTAttccattttattattgtattgGAGTGCTGGCCTTCTTTGTACTGATTGGGTTTTTTGGTCTCATACTGCATTGCTCCTCCCTCAATACCAATGACCCCAGAATGGCTGGTTGTCAGAACTGTTGTTATGGATGGGGCATCTTGGATTGCTTTCCCGCATCAATGGAGGCGTGCTTTGCCCTTGTGGTTGTTTTTGTTGTCATCTTTGCAATTCTTGGTATAGCTTATGGTTTTCTTGCTGCCACCATGGCCATTCAAAGAATTTGGCAGAGGCACTACCATATCCTCACCAAGAGGGAGCTTACAAAGgAATACATAGTAGAGGATCTTCGTGGCTGTTATTTCCCACCAAAGTTGGACCCAGAACATGAAGGTCGCTTGAAAATGCTTAAGCTCTCGTGA 924 0.4545 MKGEVQLQPPSVLQSPRDSDPLLHNQEEDESPGSSGEIKDEEDVEAGSLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVELFEDNSWRKIKFRLFVARDVFLVFLAVQTVIAAMGGFAYIMDKDGSFRNSFDDGWDRILSKHPIPFYYCIGVLAFFVLIGFFGLILHCSSLNTNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLRGCYFPPKLDPEHEGRLKMLKLS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1079 307 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 306 - -
Ssu6g1079 307 CDD RING_CH-C4HC3_MARCH 52 103 - -
Ssu6g1079 307 ProSiteProfiles Zinc finger RING-CH-type profile. 44 109 IPR011016 GO:0008270
Ssu6g1079 307 MobiDBLite consensus disorder prediction 1 42 - -
Ssu6g1079 307 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 306 - -
Ssu6g1079 307 SMART ringv_2 51 103 IPR011016 GO:0008270
Ssu6g1079 307 MobiDBLite consensus disorder prediction 21 42 - -
Ssu6g1079 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 116 IPR013083 -
Ssu6g1079 307 Pfam RING-variant domain 52 102 IPR011016 GO:0008270
Ssu6g1079 307 SUPERFAMILY RING/U-box 49 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1079 Ssu-Chr6 17553384 17564594 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1079 1 306 C3H Transcription Factor Family AT1G11020 80.625 4.45e-173 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1079 - - gmx:100818950 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1079 6 17553384 17564594 Ssu6g1079 6 17553384 17564594 ECH