Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1078 ATGTCCGTGTGCGGCCAAGAAGAGCTTGAACTGTCCAGGGATGGCAGCCACTACAGTCTCTCCACTGGAATATTACCTTCTCTTGGTGCCAAAAGTAACCGCAGAATCAAGCTCAGGCCCTTCATTATATCGCCCTATGACCGCCGttacagGATATGGGAAACTTTCCTTGTTATTCTGGTAGTTTACACTGCTTGGGTTTCTCCCTTTGAATTCGGATTCCTTAAGAAACCACAAGCACCCCTTTCCATCAGCGATAATGTTGTCAACGGATTTTTCGCCGTGGATATAGTTCTCACCTTCTTCTTGGCTTACGTTGACAAAACCACCTATTTGTTCGTGGATGAGCCAAAACAAATTGCTTGGAAATATGCAAGGACTTGGTTGGCCTTCGATGTTATCTCTATCATTCCTTCGGAGCTTGTTCAAAAGATATCACCAGCTCCTCTTCAATCTTATGGTCTATTCAACATGCTTCGGCTTTGGCGTCTTCGAAGAGTCAGTGCTTTGTTTTCTCGGCTTGAGAAGGACAGAAACTATAACTATTTTTGGGTTCGGTGTGCTAAGCTTATTTCTGTTACCCTCTTTGCTGTTCATTGTGCTGCATGTTTCTATTATCTTATTGCTGCACGTTATCATGATCCCAAAAAGACATGGATTGGGGCAACGATGGATAATTTCCTTGAACACAGCTTGTGGACAAGATATGTGACATCTATTTACTGGTCTATTACTACCTTAACAACAGTCGGTTATGGTGATTTGCATCCAGTGAATTCAAGAGAGATGATCTTTGACATCTTCTATATGCTCTTTAATCTGGGGTTAACAGCATATCTGATTGGTAACATGACCAACTTGGTTGTCCACGGCACAAGTCGAACCAGAATATTTAGGGATACCATACAAGCTGCCTCAAATTTCGCCCATAGGAACCAACTGCCTCCTCGTCTACAAGACCAAATGCTTGCTCACTTGTGTTTGAAGTACAGAACAAACTCAGAAGGGTTGCAGCAGCAAGAGACACTTGACTCTCTTCCTAAAGCCATCAGATCGAGCATTTCAcattatcttttctattctctaATTGATAAGGTCTACTTGTTTCATGGGGTTTCGAATGACttgctctttcaattgGTGTCAGAGATGAAAGCTGAATATTTTCCACCCAAAGAAGACGTTATCTTGCAAAACGAAGCCCCCACTGATTTTTATATACTAGTCACTGGTGCCGTGGACCTAGTAGTTCTTAAAAATGGGGTTGATCAGGTTGTTGGAGAGGCCAAAACTGGCGATCTTTGTGGTGAGATTGGTGTGCTTTGTTATAAGCCACAGCTTTTCACAGTTCGAACAAAGCGATTGAGCCAGTTGCTGAGGCTGAACCGTACTACGTTCTTGAATATTGTTCAGGCCAACGTAGGAGACGGAACCATAATCATGAATAATCTCCTTCAGCATTTGAAAGAGCTCAACGATCCAATCATGGAGGGAGTTTTGGTGGAGATTGAGAACATGTTAGCTCGTGGAAGGATGGACCTACCAGTGAGTGTATGCTTTGCGGCAGTAAGAGGAGATGACTCGTTGTTACATCAATTGCTCAAACGGGGTTTGGATCCAAATGAATCCGACAACAATCGAAAGACAGCTTTGcaTATAGCCGCATCTCAAGGAAAAGAGAACTGTGTTTTGCTTCTGTTGGATTATGGGGCGGATCCCAACATTAGAGATTTGGATGGTAATGTGCCACTTTGGGAGGCTATAGTGGGAGGCCATGACTCAGTGAGCAAGCTGTTGGCAGAAAATGGAGCTAACTTGCAATGCGGGGATGTGGGTCAATTTGCATGTACTGCCGTTGAACAGAACAGACTCAACTTGCTGAAGGAAATAATGCGCTATGGGGGAGATATCACGCTTCCAAACAGTGACACTGGGACCACAGCTTTGCACGTTGCAGTCTCGGAAGCCAATGTTGAGACAGTCAAATTCCTTTTGGATCACGGGGCGAGTATTGACAAACCAGACAAGCATGGTTGGACCCCCAAAGCTCTAGCAGACCAGCAGTCACATACAGAAATCAAAGCCATTTTTGACTCCATTGGGGAGCCAAAGGTTCAGTCCTCAGCTGCTATTCCCGAGAGGCAGAGTAAGATCAGGTACCTTGGTAGGTTTACAAGTGAGCCAACCATGCCTTTACCCCATCATGGCTCATTTCAGGGAACAGATGGCTCTTGGAGCCATAGCCAAAGCCAAAGCCACAGCCACAGCCACAGCCACAGCCGCCCAAGGCGTAGGAGCAACAACTACCATAACTCACTCTTTGGGATAATGTCAGCAGCACACAATGGAGAAAGGGACCTGCTTTTATCTCTTGACATGAATAAAAATGCCAGGAATGGTATGAAGAGTAGAGTTGGCCCAACTAGAGTAATAATTAGTTGCCCTGAAGAGTGTGAGGTTGTTGGGAAGCTTGTTTTACTACCTGGAAGCTTTCAAGAGCTACTTGAGATTGGAGCGAAGAAATTTGGTGTCTATCCTGCCAAGGTTGTATGCAAAGATGGAGCTGAAATTGAAGAAATAGAGGTGATTAGAGATGGTGACCATCTTGTTTTTGTAGGTGCTGGTGGCGTGCCAGAATCCAACTGTCCACCACCCACGAATGGTGTGCATATATAG 2676 0.4417 MSVCGQEELELSRDGSHYSLSTGILPSLGAKSNRRIKLRPFIISPYDRRYRIWETFLVILVVYTAWVSPFEFGFLKKPQAPLSISDNVVNGFFAVDIVLTFFLAYVDKTTYLFVDEPKQIAWKYARTWLAFDVISIIPSELVQKISPAPLQSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCAKLISVTLFAVHCAACFYYLIAARYHDPKKTWIGATMDNFLEHSLWTRYVTSIYWSITTLTTVGYGDLHPVNSREMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRIFRDTIQAASNFAHRNQLPPRLQDQMLAHLCLKYRTNSEGLQQQETLDSLPKAIRSSISHYLFYSLIDKVYLFHGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLVVLKNGVDQVVGEAKTGDLCGEIGVLCYKPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKELNDPIMEGVLVEIENMLARGRMDLPVSVCFAAVRGDDSLLHQLLKRGLDPNESDNNRKTALHIAASQGKENCVLLLLDYGADPNIRDLDGNVPLWEAIVGGHDSVSKLLAENGANLQCGDVGQFACTAVEQNRLNLLKEIMRYGGDITLPNSDTGTTALHVAVSEANVETVKFLLDHGASIDKPDKHGWTPKALADQQSHTEIKAIFDSIGEPKVQSSAAIPERQSKIRYLGRFTSEPTMPLPHHGSFQGTDGSWSHSQSQSHSHSHSHSRPRRRSNNYHNSLFGIMSAAHNGERDLLLSLDMNKNARNGMKSRVGPTRVIISCPEECEVVGKLVLLPGSFQELLEIGAKKFGVYPAKVVCKDGAEIEEIEVIRDGDHLVFVGAGGVPESNCPPPTNGVHI 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1078 891 SMART cnmp_10 368 485 IPR000595 -
Ssu6g1078 891 ProSiteProfiles Ankyrin repeat region circular profile. 644 676 - -
Ssu6g1078 891 Gene3D - 52 289 - -
Ssu6g1078 891 SMART ANK_2a 644 673 IPR002110 GO:0005515
Ssu6g1078 891 SMART ANK_2a 579 608 IPR002110 GO:0005515
Ssu6g1078 891 SMART ANK_2a 546 575 IPR002110 GO:0005515
Ssu6g1078 891 SMART ANK_2a 513 542 IPR002110 GO:0005515
Ssu6g1078 891 SMART ANK_2a 610 639 IPR002110 GO:0005515
Ssu6g1078 891 PANTHER POTASSIUM CHANNEL AKT1 7 873 IPR045319 GO:0005249|GO:0006813
Ssu6g1078 891 MobiDBLite consensus disorder prediction 739 753 - -
Ssu6g1078 891 Pfam KHA, dimerisation domain of potassium ion channel 809 871 IPR021789 -
Ssu6g1078 891 ProSiteProfiles Ankyrin repeat region circular profile. 546 577 - -
Ssu6g1078 891 Pfam Ion transport protein 51 295 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Ssu6g1078 891 MobiDBLite consensus disorder prediction 725 769 - -
Ssu6g1078 891 Pfam Ankyrin repeats (3 copies) 618 691 IPR002110 GO:0005515
Ssu6g1078 891 Pfam Ankyrin repeats (3 copies) 520 607 IPR002110 GO:0005515
Ssu6g1078 891 Gene3D Jelly Rolls 332 493 IPR014710 -
Ssu6g1078 891 Gene3D - 514 698 IPR036770 -
Ssu6g1078 891 CDD CAP_ED 368 473 IPR000595 -
Ssu6g1078 891 ProSiteProfiles Ankyrin repeat profile. 579 611 IPR002110 GO:0005515
Ssu6g1078 891 ProSiteProfiles Ankyrin repeat profile. 644 676 IPR002110 GO:0005515
Ssu6g1078 891 ProSiteProfiles cAMP/cGMP binding motif profile. 368 470 IPR000595 -
Ssu6g1078 891 PANTHER K+ TRANSPORTER 1-RELATED 7 873 - -
Ssu6g1078 891 SUPERFAMILY cAMP-binding domain-like 293 488 IPR018490 -
Ssu6g1078 891 Pfam Cyclic nucleotide-binding domain 388 472 IPR000595 -
Ssu6g1078 891 ProSiteProfiles KHA domain profile. 809 889 IPR021789 -
Ssu6g1078 891 ProSiteProfiles Ankyrin repeat region circular profile. 579 606 - -
Ssu6g1078 891 SUPERFAMILY Ankyrin repeat 519 698 IPR036770 -
Ssu6g1078 891 PRINTS EAG/ELK/ERG potassium channel family signature 63 70 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu6g1078 891 PRINTS EAG/ELK/ERG potassium channel family signature 97 106 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu6g1078 891 PRINTS EAG/ELK/ERG potassium channel family signature 262 273 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu6g1078 891 PRINTS EAG/ELK/ERG potassium channel family signature 86 96 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu6g1078 891 PRINTS EAG/ELK/ERG potassium channel family signature 280 289 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu6g1078 891 PRINTS EAG/ELK/ERG potassium channel family signature 236 253 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu6g1078 891 ProSiteProfiles Ankyrin repeat profile. 546 578 IPR002110 GO:0005515
Ssu6g1078 891 SUPERFAMILY Voltage-gated potassium channels 45 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1078 Ssu-Chr6 17545312 17552266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1078 11 871 Ion Channels AT2G25600 62.745 0.0 1099
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1078 K21867 - gmx:100819491 1602.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1078 6 17545312 17552266 Ssu6g1078 6 17545312 17552266 ECH