Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1070 ATGGAGGACAGAAAGGCCAACACAATCGCTGTTATATCAGTGATCGCACTGATCATCGTCATCATCGTTGCCCGTGTCTCCTTGAAGCTTTCAAAGGCCTTCTTCCTCATTTGCGGCGCCGCAATTGCCGTGATTCTGGCCGTCTTTTCGTGCGCACTCATAAGGCACCGTTACAACCGCAGAAGAAGGTTGTTGGAGTCACAGTTGAAGTCAGAGGGGCGAGAGCTTCGCATAGAGTACAGTTTCTTACGAAAGGTTGCCGGGGTTCCCACAAAGTTTCGTTACAAGGAGCTGGAGGAAGCAACGGACGGGTTCCAGGCTCTGCTGGGAAGAGGGTCCTCAGCTTCGGTCTTCAAAGGCATTCTCAGCGATGGAACTTCGGTTGCCGTGAAGCGAATCAATGGAGAGGAGCGCGGGGAGAAGGAGTTCAGATCAGAGGTGGCAGCCATGGCCAGCGTGCACCATGTCAACCTCGTGCGCTTGTTTGGGTACTGCAACGCTCCCACGGCGCCTAGGTACCTTGTTTATGAGTACATCCCAAACGGGTCTTTGGACTGTTGGATATTTCCCTCGAGGGAAAGTCATGCACGCAGGGGAGGGTGTTTGCCGTGGAACTTGAGGTATAAGGTTGCGATTGATGTTGCTAAAGGCTTGTCTTACCTTCACCATGATTGTAGGAGAAGGGTTTTGCACCTTGATGTGAAGCCCGAGAATATACTCTTGGATGAGGATTATAAGGCTCTTGTTTCGGATTTTGGTCTCTCAACGCTTGTTGGCAAGGATGTGAGTCAGGTTATGACGACAATGAGGGGGACGAGAGGGTACTTGGCTCCTGAATGGCTCTTGGAAAGAGGGGTGTCGGAGAAGACTGATATTTACAGTTATGGGATGGTTCTGTTGGAGATCATTGGAGGGAGAAGGAATGTGTCGAGGGTGGAGGATCCGAGGGACAGGACTAAGAAAAAGTGGGAGTTCTTTCCCAAGATTGTTAACGAGAAAGTGAGGGAGGGGAAGTTCATGGAGATTGTGGATCGTAGGTTGGTGGACCGTGGGGGTGTTGATGAGAGTGAGGTGATTAGATTGGTGCATATTGCCTTGTGGTGCATACAAGAGAAGCCAAGGTTGAGGCCCAGCATGGCACAAGTGGTTGATATGCTTGAGGGGCGTGTGAGGGTGGATGAACCCCCTGGCTCCAGATTGATTCTTGTTGATTTGCTGGCTGTTGATGAAGACCCTGCAGATCATCGGAATCTGGCTAGGTTGTTGACCACTGTGTCGAGCCATGAGGATTGTACATCCACCTACTCCATGGGAACCACTATTTTATCTGGCAGGTAG 1338 0.509 MEDRKANTIAVISVIALIIVIIVARVSLKLSKAFFLICGAAIAVILAVFSCALIRHRYNRRRRLLESQLKSEGRELRIEYSFLRKVAGVPTKFRYKELEEATDGFQALLGRGSSASVFKGILSDGTSVAVKRINGEERGEKEFRSEVAAMASVHHVNLVRLFGYCNAPTAPRYLVYEYIPNGSLDCWIFPSRESHARRGGCLPWNLRYKVAIDVAKGLSYLHHDCRRRVLHLDVKPENILLDEDYKALVSDFGLSTLVGKDVSQVMTTMRGTRGYLAPEWLLERGVSEKTDIYSYGMVLLEIIGGRRNVSRVEDPRDRTKKKWEFFPKIVNEKVREGKFMEIVDRRLVDRGGVDESEVIRLVHIALWCIQEKPRLRPSMAQVVDMLEGRVRVDEPPGSRLILVDLLAVDEDPADHRNLARLLTTVSSHEDCTSTYSMGTTILSGR 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1070 445 Gene3D Transferase(Phosphotransferase) domain 1 179 394 - -
Ssu6g1070 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Ssu6g1070 445 SUPERFAMILY Protein kinase-like (PK-like) 85 387 IPR011009 -
Ssu6g1070 445 PANTHER RECEPTOR-LIKE KINASE 1 445 - -
Ssu6g1070 445 Gene3D Phosphorylase Kinase; domain 1 67 178 - -
Ssu6g1070 445 SMART serkin_6 103 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1070 445 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 1 445 - -
Ssu6g1070 445 ProSiteProfiles Protein kinase domain profile. 103 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1070 445 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Ssu6g1070 445 Pfam Protein kinase domain 108 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1070 Ssu-Chr6 17376498 17377835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1070 1 398 Receptor kinase-like Gene Family AT5G20050 65.835 0.0 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu6g1070 Pkinase 7.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1070 - - gmx:100779485 802.742