Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1058 ATGAGTTTCTCTGACCATATTCCATCCTTTATGATGTCTCCGCCGTCATTTTCCACAGACACAGATGCCATTGAAGTGAGGCTTCAATTCCCAATGAACAACGAATCATTGGAGCCACATTCACCACAGGATCAACCCCCTTCGTTCAAAAGGGCAAGGACCTGTGATAGCAGCCACTCCAATAATGCAATGACATGCCCTCCAAGGATGATTCAGCACCCCACAGTTAACAAAGGAACGAGCCACATTTTCTTCAAGACCCGCATTTGTGCAAAGTTCAGGGTTGGTGCTTGTAGGAACGGTGAGAACTGCAACTTTGCACACGGGGTTGAGGACATGAGGCAGCCGCCACCAAATTGGCAAGAGCTTGTTGGGTTGCGCAATGAGGAGCGGCAACAACCATCGGGAAATTGGGATGATGACCAGAAAATCATACACAAGATGAAGCTGTGCAAGAAGTATTACAATGGGGAGGAATGCCCCTATGGTGATAAGTGTAGTTTTCTTCATGAAGACCCTGCCAAATTCAGGGATGATTCAGGGAGGTTCAGGGAGACCACAGCTATAAGCATTGGAACTAATGGATCCCCCAAGTCCTATGGTGATGGCTctaataatttagaaactaaCAGGGCTGTGAACACGGGGTTAACTGTTTCCCGGGGTAATGTGAAGTCTACTTATTGGAAGACTAAACTGTGTATCAAGTTTGAGACAACAGGCCACTGCCCCTTTGGGGATGACTGTCATTTTGCTCATGGCCAAGCAGAGTTACAAGTTCCTGGTGGACGCACTGAGGCAGAAATTGTAGGTGCCATTCCAATTTCAACTAAAGCTACCATTCCAACCTTACCAAGAGCTACATCAGTTTCTTCTAATGATGCAATTCCTAGCCACAGAGTAAGTGTACCTCCAGCAAATGAAGAGGAGGGTAAGAAGTATTTACTGAAGTGGAAAGGACCCAAGAAGATCAATCGAATTTATGGTGATTGGCTTGACGATTTACCACTTACTCACAACTTGCCAAGTAGAGTGGGGACCTGA 1044 0.4569 MSFSDHIPSFMMSPPSFSTDTDAIEVRLQFPMNNESLEPHSPQDQPPSFKRARTCDSSHSNNAMTCPPRMIQHPTVNKGTSHIFFKTRICAKFRVGACRNGENCNFAHGVEDMRQPPPNWQELVGLRNEERQQPSGNWDDDQKIIHKMKLCKKYYNGEECPYGDKCSFLHEDPAKFRDDSGRFRETTAISIGTNGSPKSYGDGSNNLETNRAVNTGLTVSRGNVKSTYWKTKLCIKFETTGHCPFGDDCHFAHGQAELQVPGGRTEAEIVGAIPISTKATIPTLPRATSVSSNDAIPSHRVSVPPANEEEGKKYLLKWKGPKKINRIYGDWLDDLPLTHNLPSRVGT 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1058 347 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 229 255 IPR000571 GO:0046872
Ssu6g1058 347 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 85 109 IPR000571 GO:0046872
Ssu6g1058 347 Gene3D - 142 174 - -
Ssu6g1058 347 Gene3D - 222 260 - -
Ssu6g1058 347 Gene3D - 77 115 - -
Ssu6g1058 347 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 1 336 - -
Ssu6g1058 347 SUPERFAMILY CCCH zinc finger 227 259 IPR036855 GO:0046872
Ssu6g1058 347 Pfam CCCH-type zinc finger 149 170 IPR041367 -
Ssu6g1058 347 ProSiteProfiles Zinc finger C3H1-type profile. 145 173 IPR000571 GO:0046872
Ssu6g1058 347 SUPERFAMILY CCCH zinc finger 82 115 IPR036855 GO:0046872
Ssu6g1058 347 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872
Ssu6g1058 347 MobiDBLite consensus disorder prediction 34 72 - -
Ssu6g1058 347 PANTHER CCCH ZINC FINGER/TIS11-RELATED 1 336 IPR045877 GO:0003729
Ssu6g1058 347 SMART c3hfinal6 84 110 IPR000571 GO:0046872
Ssu6g1058 347 SMART c3hfinal6 228 255 IPR000571 GO:0046872
Ssu6g1058 347 SMART c3hfinal6 145 172 IPR000571 GO:0046872
Ssu6g1058 347 ProSiteProfiles Zinc finger C3H1-type profile. 228 256 IPR000571 GO:0046872
Ssu6g1058 347 SUPERFAMILY CCCH zinc finger 145 172 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1058 Ssu-Chr6 17224459 17226599 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1058 230 259 C3H Transcription Factor Family AT1G68200 60.000 5.54e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu6g1058 zf-CCCH 9.2e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1058 - - gmx:100793865 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1058 6 17224459 17226599 Ssu6g1058 6 17224459 17226599 ECH