Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1054 ATGGACGAAGATTCGCTGAAGCGCCACACCGATTGTGTTTATTTCTTGGCCTCTCCCCTCACTTGCAAGAAgGGGGCTGAATGTGAGTATCGGCATAATGAGATTGCGAGGCTTAACCCTAGGGATTGCTGGTACTGGGTATCTGGGCAATGCCTTAATCCAACGTGTGCTTTTAGACACCCTCCATTGGATGGGCATACTGGAGTGCCAGTGCCATCTGAACCTACGCAAACTTCATTACCTGCAAACAAGACGATGGTtccttgttattttttcttcaatggaTTTTGCAACAAAGGTGACAGATGCTCATTTTTGCATGGGCCTGATGATAGCATTTTTACTGTAAAACCTGTGAAGAATGACAATGGAAGGACTGATGCACTCAACctagaaaataaaacatcatcAGGAAATAGAACAGATGTAGCATCAACACCAACTGACCGATCTTTAACTGCTCCAAAGAATTTGTCTGATTTTAAATTTCAGGCTAAGGAAGATCATCAGCTACAATTACCCAAAAATGTTAAGAGGCCAGGTGATTGCCCAGAGATATCTGCTTTAGAATATAAAGAAGCTGCAGTGAGTAGGTCAGACTCTTCGTTTCCAGATGATGGCTTTGTTCATAATGTATCTCTTTTATGTACTGAGCAGAGCTCAGAGGAGCAAGTAAATAGTCACATAGAGCCTGAGGAGCGGTGGGAATCATCCCCTCATTCCCCTGGATTTGATGTTCTTGTTCATGATGAATTGGAGAACTTGGGTTATGAGGAAGATTCTGAATATTTACCAGTGCTTGATAGGGATGAGCAAGAGCTGAATGAGCAGTACTTGGGGTATGAATTTAAAGATCCAGTTGAGTATATGTGCCCAGAAGCTGATATTCTGTATGAACAAGAAACATATGATGGTCACAGATGTCTAGATAGAGATCGTCAAGCTAATGGCGGAACAGTTCATGCTTGTTCCAGAGATATATTCTTAGATTCTATATTGTCCAGGAAAAGGATTCGGACGTCAGCTGAGATGGCTGCTTATGACAAGAATTTAGATCTACGTGACCGTCTGAGGAGACGTAGAGAAATTAATGGTCCTACTGTTACAGGCTTCTTAAGAAGACAAGAATCATCTTCTTTGATGGTTCGAAACCAGGAAAGGCATCAGAGGCCTGGCATTGAGCATCGGCCAAGTAGAAGATTGACATCACAATTGGGATATAGTGCTATAGATTCGATTGGAGAGGTTGAAACTCTTTCAATTGCTAACAGGCACAGGTCATTCAGGCATTTCCAGCAACATAGACCAAGGAGGCATTATAGAGAAAACCTAGCTAAACGGCAGTTTCTTTCATCTAAAATATCCAGGAAACCAGTTTTAAAACAAAGGGGATTTATTCATGAGTCCGCTACATTTTCAGGACCCAAGACTCTTGCAGAAattaaagaagagaagaagaaggctGAAGAAAGTTTACATTGTAAAAGCACACCAACTGATTTCCAGGATCCCAAACCTCTGAGTGAAATTCTCAAGGACAAAAGGACCATGGATCAGTGA 1560 0.4038 MDEDSLKRHTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWVSGQCLNPTCAFRHPPLDGHTGVPVPSEPTQTSLPANKTMVPCYFFFNGFCNKGDRCSFLHGPDDSIFTVKPVKNDNGRTDALNLENKTSSGNRTDVASTPTDRSLTAPKNLSDFKFQAKEDHQLQLPKNVKRPGDCPEISALEYKEAAVSRSDSSFPDDGFVHNVSLLCTEQSSEEQVNSHIEPEERWESSPHSPGFDVLVHDELENLGYEEDSEYLPVLDRDEQELNEQYLGYEFKDPVEYMCPEADILYEQETYDGHRCLDRDRQANGGTVHACSRDIFLDSILSRKRIRTSAEMAAYDKNLDLRDRLRRRREINGPTVTGFLRRQESSSLMVRNQERHQRPGIEHRPSRRLTSQLGYSAIDSIGEVETLSIANRHRSFRHFQQHRPRRHYRENLAKRQFLSSKISRKPVLKQRGFIHESATFSGPKTLAEIKEEKKKAEESLHCKSTPTDFQDPKPLSEILKDKRTMDQ 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1054 519 MobiDBLite consensus disorder prediction 124 155 - -
Ssu6g1054 519 MobiDBLite consensus disorder prediction 482 496 - -
Ssu6g1054 519 Gene3D - 2 63 - -
Ssu6g1054 519 Gene3D - 74 151 - -
Ssu6g1054 519 SUPERFAMILY CCCH zinc finger 83 108 IPR036855 GO:0046872
Ssu6g1054 519 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 109 IPR000571 GO:0046872
Ssu6g1054 519 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 518 - -
Ssu6g1054 519 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Ssu6g1054 519 Pfam Zinc-finger containing family 7 63 IPR041686 -
Ssu6g1054 519 MobiDBLite consensus disorder prediction 482 519 - -
Ssu6g1054 519 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Ssu6g1054 519 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE 1 518 - -
Ssu6g1054 519 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Ssu6g1054 519 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Ssu6g1054 519 SMART c3hfinal6 6 34 IPR000571 GO:0046872
Ssu6g1054 519 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Ssu6g1054 519 MobiDBLite consensus disorder prediction 126 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1054 Ssu-Chr6 17194094 17197046 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu6g1054 zf-CCCH_3 3.4e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1054 - - gmx:100792282 860.522
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1054 6 17194094 17197046 Ssu6g1054 6 17194094 17197046 ECH