Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1048 ATGCCATGGTCCTTTGCCTCGCCCTGTGTCCCTCCGCAACACCGCGCTAACAGCATTCCACCTTTCTCCGACGTTTCTGCCCGTGGTGGCGCTAGGCCACGTGGCGGTGGCCGTGGTAGTGGCAGTTCCGGAGCCCGGCGGTTCTCCCGCCCGCAGGAGCCTTCTAACCGGAGCAGCCGGTTCCCCGTGGACGAAGCACAAAACGGAGACACTATCAACTTCGACGCGTACGAGTCGGTCCCGGTGGAGGCGGGTGGGAAGAACGTGCCTCCGCCGGTGACCGCCTTCGACGAAACGGACTTAGACGAAGGTTTGAAGAGGAACATCGCGCGATGCAGGTACGTGAAACCCACGCCGGTTCAGCGTCACGCGATTCCCATTGCCAGTGCGGGCCGCGACTTGATGGCGTGTGCGCAGACTGGGTCGGGTAAAACGGCGGCGTTTTGCTTTCCCATTATATCCGGGATTCTGAAGGGTCGTTCCACTTCTGGGTTCTCATCAATGCCTCGCGCTGCCGCTGTTGCGTGCCCCACTGCACTTATTCTGTCTCCTACCAGGGAGTTGTCGTGCcagataAGTGATGAAGCGAATAAATTTGCATATCAAACTGGAGTGAAGGTTGTGGTCGTTTATGGTGGGGCTTCAATTACTCAGCAGcTGCGCCTTTTGGAGAGAGGTGTTGACATACTGGTTGCAACTCCTGGGCGTTTGGTGGATATTATTGAGAGAGAAAGGGTTTCGTTAATGAGGATAAAGTATCTTGCGTTGGATGAGGCAGATCGTATGTTGGACATGGGTTTTGAGCATCAAATACGTAAGATTGTGGAGCAAATGCACATGCCCCCGCCGGGTATTAGACAAACATTGCTGTTTAGTGCGACCTTCCCTAATGATATTCAGAAGCTTGCATCGGACTTTTTATCCAATTACATATTCCTGTCTGTTGGAAGGGTTGGATCGAGTACTGAACTGATTGTGCAGAAGATTGAGCTTGTACAGGATACTGAAAAGAGAGACCATCTTATTGATCATCTCCGTCGTCAAAAGGTGCATGGAGCCAATGGGAAGCATGCTTTAACGCTTGTATTTGTTGAAACCAAGAAAGGAGCGGATGCTTTAGAAATCTGGTTGTCGAGAAGTGGCTTTCCAGCTATTGCCATACATGGTGACAAAGTTCAAATGGAAAGGGAACGTGCTTTGAGATCTTTCAAATCTGGTTTGACACCAATTTTGGTTGCCACTGATGTTGCATCACGGGGATTGGATATTCCGCATGTGGCTCATGTTATTAACTTTGACTTGCCTAGAGACATAGATGACTACGTTCATAGAATTGGAAGAACAGGGCGTGCAGGCAAATCTGGTTTAGCCACTGCCTTCTTCAGCGACAAGAACAGCCCTATTGCGAAGGCGCTTGTTGGACTGTTGCAGGAAGCAAACCAAGAAGTTCCGTCTTGGCTCAACCAATATGCCGAGTATTCACCATctggtggtcgtggtcgtgGCTATGGAGCTCAGCGTTACAGCAGTGATAGTTATGGTGGTCGTGATTTTCGAAGTTTCACTGAACCTGAGGTGCAGAATTACAACTGCTACAGTACTTATGGCAATACAGATCATGCTGTAGAGTCTTGCCCTGATACTTCTTACACTGATGCCTCTTATGAAATACAAAACTTCAATAGAGATTCCTCTTTTGACAGTTTGAATAGAGGTTCTGCCTACAGTTATAATCATTCTGATGTTAACTCTGGTGATTTGTATGATGGTGGTAGTGTTGAAGAAGATGGGCCATGTGGTTATGCATCTATTGTTGCCACTGGATGGGATTAG 1833 0.4834 MPWSFASPCVPPQHRANSIPPFSDVSARGGARPRGGGRGSGSSGARRFSRPQEPSNRSSRFPVDEAQNGDTINFDAYESVPVEAGGKNVPPPVTAFDETDLDEGLKRNIARCRYVKPTPVQRHAIPIASAGRDLMACAQTGSGKTAAFCFPIISGILKGRSTSGFSSMPRAAAVACPTALILSPTRELSCQISDEANKFAYQTGVKVVVVYGGASITQQLRLLERGVDILVATPGRLVDIIERERVSLMRIKYLALDEADRMLDMGFEHQIRKIVEQMHMPPPGIRQTLLFSATFPNDIQKLASDFLSNYIFLSVGRVGSSTELIVQKIELVQDTEKRDHLIDHLRRQKVHGANGKHALTLVFVETKKGADALEIWLSRSGFPAIAIHGDKVQMERERALRSFKSGLTPILVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGKSGLATAFFSDKNSPIAKALVGLLQEANQEVPSWLNQYAEYSPSGGRGRGYGAQRYSSDSYGGRDFRSFTEPEVQNYNCYSTYGNTDHAVESCPDTSYTDASYEIQNFNRDSSFDSLNRGSAYSYNHSDVNSGDLYDGGSVEEDGPCGYASIVATGWD 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1048 610 Gene3D - 315 494 IPR027417 -
Ssu6g1048 610 CDD SF2_C_DEAD 325 461 - -
Ssu6g1048 610 Pfam DEAD/DEAH box helicase 118 302 IPR011545 GO:0003676|GO:0005524
Ssu6g1048 610 SMART helicmild6 371 452 IPR001650 -
Ssu6g1048 610 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 337 491 IPR001650 -
Ssu6g1048 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 467 IPR027417 -
Ssu6g1048 610 SMART ultradead3 113 328 IPR014001 -
Ssu6g1048 610 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 94 122 IPR014014 GO:0003724
Ssu6g1048 610 Pfam Helicase conserved C-terminal domain 353 452 IPR001650 -
Ssu6g1048 610 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 37-LIKE ISOFORM X1 23 532 - -
Ssu6g1048 610 MobiDBLite consensus disorder prediction 1 68 - -
Ssu6g1048 610 MobiDBLite consensus disorder prediction 45 66 - -
Ssu6g1048 610 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 125 313 IPR014001 -
Ssu6g1048 610 Gene3D - 51 314 IPR027417 -
Ssu6g1048 610 CDD DEADc_DDX3_DDX4 96 319 IPR044763 GO:0003724|GO:0005524
Ssu6g1048 610 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 23 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1048 Ssu-Chr6 17098191 17100795 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1048 95 462 Eukaryotic Initiation Factors Gene Family AT3G13920 35.501 9.37e-58 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1048 K11594 - gmx:100791226 938.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1048 6 17098191 17100795 Ssu6g1048 6 17098191 17100795 ECH