Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1037 ATGGATATCATGGCTATAGCTATCACCTTCCTGCTGCTCATGTGTGCAGGCACAAGAGTTGAAACGCAGCCACCAAAGCAGCAGATAAAACCCAGTGCCTCACTTCTCCCAAATAGTACTCCTGCTTGGTGGCCTTCCCCTTCTGGTCAATTTGCATTTGGTTTTTATCCGCAAGGACAAGGCAGTGTCTTTGTCGTTGCAATTTGGTTGATTAGTGGGAAGAACGAGACAGTGGTATGGACTGCACAGCGGAATGATCCTGAGGTCACCTCAAATGCAAAGCTACAACTAACAATGGATGGTAAACTCGTACTAATGGATGGCCAAGGAGAAGACAAGGTTATTGCAGGTAATGCTAGTGCAAAAGCTTCCTCTGCCTCCATGCTTGATTCAGGAAACTTTGTACTATACAACAATAATTCCAGCATCATATGGCAGAGTTTCGATTACCCAACAGATACTTTGTTAGGGGGTCAATCTCTTCCTAATGGACATCAACTGGTCTCTAGTTCATCGCAGAACGGCCACTCAAGTGGACGGTATCGTCTCAAGATGCAGGATGATGGAAATCTTGTTCTGTATCCAGTAAACACATCTGACAAAGCACCGGATGCTTACTGGTACTCTAATACTTTCAATTCTGGTTTCAAAACTCATCTTTATCTCAACCAAACAGGTTCACCGCTGATTATAAATGGCAGTGATGGGGGAATTATAGGGAATCTTGACGGTGATTCATCTTTGGCTAACAATGGGAGCCGGATCATTTATCGTGCAACCCTGAATTTTGATGGGATATTTCGGCTGTATGCGCATTTTAACAATGGTAGTATTCAAAAAGTGGAAAATTGGCCGAGGGGAAAAAACTCTTGTAGAGTAAAGGGTTTTTGTGGCTTCAACAGCTACTGCACTTTCAATGACGCCCAACCAGAGTGCTCTTGTCTTTCGggttttgaatttatatatccaACCGACTCCACTCTGGGCTGCAAAAGGAGGTTTCAGAAAGAAGATTGTAGTGGGGAGAAAGATAGCGCAACCTTTTATGACATGAAGCAGATGGAGGACATTGTGTGGGTGGATGATCCTTATTTTCAGGCTGAAATGTCACAAGAAGATTGCTCCTCTACTTGCTTGGCTGATTGCACCTGTGAGGCTGCATTTTATGATGGTGAAAGCTGCATGAAACAAAGGCTGCCTTTGAGATATCTCAGATGGTCAATAGAAAATGAAGCTGGCGCCATGCTATTCTTGAAAGTGGGAAAGAGCCTCAAGAACGGGACGGGGAATGATAATCCTGTGCCTGAACtaccacctccacctccacctccaatCAAGACTACAAGTAACAAAGCAACTGTGAAGATTATTGTCATTACATCCGTATTTTTTCTGCTTTTATGTTCAACCATTGTGATCTCCAGCCACTACATTTACAAGATTCGAATATTCACGTATAAAAAGTTGATGGAGACAGGGAACTTGGGCCTTAATGAAGAGCTGACTTTGAGAAGGTTTTCATACAGCGAGCTGAAAAGAGCAACAAATAATTTCAAACAAGAGTTGGGAAAAGGATCTTTTGGAGCAGTTTACAAGGGGGCTTTGCACAAAGGTAGAAGGTTAATTGCGGTGAAGAGACTAGAGAAGTTAGTGGAAGAAGGAGATAGGGAGTTCCAAGCAGAAATGCGAGCCATTGGAAAAACCCACCACAGGAACCTACTTAATAAGCTTCTTCTTTGGGAAGCTGTGGATAAAACTGTCGCGGAAAACATGGTTAAGGTGGCACTTTGGTGTGTCCAAGATGAACCTATTTTGCGCCCAACCATGAAGAGTGTGGTGTTGATGTTAGAAGGGATCACCGATATAGCAATTCCTCCTTGTCCCAATTCTAATTACATGTGA 1902 0.4227 MDIMAIAITFLLLMCAGTRVETQPPKQQIKPSASLLPNSTPAWWPSPSGQFAFGFYPQGQGSVFVVAIWLISGKNETVVWTAQRNDPEVTSNAKLQLTMDGKLVLMDGQGEDKVIAGNASAKASSASMLDSGNFVLYNNNSSIIWQSFDYPTDTLLGGQSLPNGHQLVSSSSQNGHSSGRYRLKMQDDGNLVLYPVNTSDKAPDAYWYSNTFNSGFKTHLYLNQTGSPLIINGSDGGIIGNLDGDSSLANNGSRIIYRATLNFDGIFRLYAHFNNGSIQKVENWPRGKNSCRVKGFCGFNSYCTFNDAQPECSCLSGFEFIYPTDSTLGCKRRFQKEDCSGEKDSATFYDMKQMEDIVWVDDPYFQAEMSQEDCSSTCLADCTCEAAFYDGESCMKQRLPLRYLRWSIENEAGAMLFLKVGKSLKNGTGNDNPVPELPPPPPPPIKTTSNKATVKIIVITSVFFLLLCSTIVISSHYIYKIRIFTYKKLMETGNLGLNEELTLRRFSYSELKRATNNFKQELGKGSFGAVYKGALHKGRRLIAVKRLEKLVEEGDREFQAEMRAIGKTHHRNLLNKLLLWEAVDKTVAENMVKVALWCVQDEPILRPTMKSVVLMLEGITDIAIPPCPNSNYM 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1037 633 Pfam Protein tyrosine and serine/threonine kinase 518 576 IPR001245 GO:0004672|GO:0006468
Ssu6g1037 633 Pfam D-mannose binding lectin 77 161 IPR001480 -
Ssu6g1037 633 PANTHER RUST RESISTANCE KINASE LR10-RELATED 574 631 IPR045874 GO:0004672
Ssu6g1037 633 PANTHER RUST RESISTANCE KINASE LR10-RELATED 24 575 IPR045874 GO:0004672
Ssu6g1037 633 ProSiteProfiles Protein kinase domain profile. 516 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1037 633 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE LECRK1 574 631 - -
Ssu6g1037 633 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE LECRK1 24 575 - -
Ssu6g1037 633 ProSiteProfiles Bulb-type lectin domain profile. 152 282 IPR001480 -
Ssu6g1037 633 CDD B_lectin 46 151 IPR001480 -
Ssu6g1037 633 ProSiteProfiles Bulb-type lectin domain profile. 20 149 IPR001480 -
Ssu6g1037 633 Gene3D Phosphorylase Kinase; domain 1 498 588 - -
Ssu6g1037 633 Gene3D - 150 278 IPR036426 -
Ssu6g1037 633 SMART blect_4 35 151 IPR001480 -
Ssu6g1037 633 Pfam S-locus glycoprotein domain 251 319 IPR000858 GO:0048544
Ssu6g1037 633 Gene3D - 22 149 IPR036426 -
Ssu6g1037 633 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 213 IPR036426 -
Ssu6g1037 633 ProSitePatterns Protein kinases ATP-binding region signature. 522 545 IPR017441 GO:0005524
Ssu6g1037 633 SUPERFAMILY Protein kinase-like (PK-like) 503 575 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1037 Ssu-Chr6 16962340 16964748 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1037 431 574 Receptor kinase-like Gene Family AT2G43700 35.616 7.50e-16 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu6g1037 B_lectin 1.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1037 - - gmx:100815958 836.639