Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1033 ATGGAGACTGGGAACTTGGGCCTCAATGAAGAGGTGACTCTCAGAAGGTTTTCATACAGCGAGCTGAAAAGAGCAACAGATAATTTCAAACAAGAATTGGGTAAAGGATCTTTTGGAGCAGTTTACAAGGGGGCTTTGCACAAAGGTAGGAGGTTGATTGCAGTGAAGAGACTAGAGAAGTTGGTGGAAGAAGGAGAAAGGGAGTTCCAAGCAGAAATGCGAGCCATTGGAAAAACCCACCACAGGAACTTAGTTCGCTTGTTGGGTTTCTGTGCCGAGGGTTCTAAAAGGCTTCTGGTTTATGAATACATGCCCAATGGCTCCCTTGGAAACCTTATCTTCGGGGCTCACAGTCAGAGTCGTCCAGAGCGGGATGAGAGAGTAAGAATAGCAGTGGAGATAGCAAGAGGGATCCTATATCTCCATGAGGAGTGTGAGGCACCAATCATTCATTGTGACATAAAGCCTCAAAACATTTTGATGGATGAGTTCTGGACTGCCAAGATATCTGATTTCGGGCTAGCCAAACTTCTCATGCCTGATCAAACCAGAACATTCACAGGGGCTAGAGGGACAAGAGGGTATGTGGCCCCGGAGTGGCACAAGAACACCCCAATATCTGTCAAGGCTGATGTTTATAGCTATGGAATAGTGCTGTTGGAAATTTTATGTTGCAGAAGAAACATCGAAGTTCGTGTCTCCGAACCTGACGAGGTTCTTCTCTCCAATTGGGCTTACAAGTGTTTTGTTGCTGGACAGCttaataaactttttctttGGGAAGCAGTGGATAAAACTGTCCTGGAAAATATGGTCAAGGTGGCACTTTGGTGTGTCCAAGATGAACCTGTTCTGCGCCCAACAATGAAGAGTGTGGTGCTGATGTTAGAAGGGATCACCGATATAGCAATTCCTCCTTGTCCCAATTCTGATTCTTTGTGA 942 0.4522 METGNLGLNEEVTLRRFSYSELKRATDNFKQELGKGSFGAVYKGALHKGRRLIAVKRLEKLVEEGEREFQAEMRAIGKTHHRNLVRLLGFCAEGSKRLLVYEYMPNGSLGNLIFGAHSQSRPERDERVRIAVEIARGILYLHEECEAPIIHCDIKPQNILMDEFWTAKISDFGLAKLLMPDQTRTFTGARGTRGYVAPEWHKNTPISVKADVYSYGIVLLEILCCRRNIEVRVSEPDEVLLSNWAYKCFVAGQLNKLFLWEAVDKTVLENMVKVALWCVQDEPVLRPTMKSVVLMLEGITDIAIPPCPNSDSL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1033 313 SMART serkin_6 27 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1033 313 ProSitePatterns Protein kinases ATP-binding region signature. 33 56 IPR017441 GO:0005524
Ssu6g1033 313 ProSiteProfiles Protein kinase domain profile. 27 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1033 313 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE LECRK1 3 310 - -
Ssu6g1033 313 PIRSF ILK 13 304 - -
Ssu6g1033 313 Coils Coil 55 75 - -
Ssu6g1033 313 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Ssu6g1033 313 Gene3D Transferase(Phosphotransferase) domain 1 104 304 - -
Ssu6g1033 313 PANTHER RUST RESISTANCE KINASE LR10-RELATED 3 310 IPR045874 GO:0004672
Ssu6g1033 313 Gene3D Phosphorylase Kinase; domain 1 6 103 - -
Ssu6g1033 313 Pfam Protein kinase domain 30 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1033 313 SUPERFAMILY Protein kinase-like (PK-like) 11 297 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1033 Ssu-Chr6 16916982 16917923 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1033 14 308 Receptor kinase-like Gene Family AT5G38280 43.564 3.21e-70 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu6g1033 Pkinase 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1033 - - gmx:100815958 553.132