Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1032 ATGAAGGATTTACGCACGAAATCAGGTTTTGACTggttctttaataaaataaagaaagaaagtCTCAAAGCATCAAGTTCTATAGTCATGGATGTCATTGCTATAACTATTACCTTGCTGCTACTCACGTCTGCAGGCACAAGGGTTGAAACGCAGCAAATACAGCTCGGTGCCTCACTTCTCCCAAATGGTACTCCTGCTTCGTGGCGTTCCCCTTCTGGTCAATTTGCATTTGGTTTTTATCCACATGGGCAAGGCAATGTCTTTGTCATTGCAATTTGGTTGGTTAGCAAGGAGACCAACACAGTGGTATGGACTGCATGGCGGGATGATCCTGCGGTCACCTCAAATGCAAAGCTACAACTAACCACAGATGGTAAACTCGTACTAATGGATGGCCACGTAAAAGGGAAGGTCATCGCAGGTAATGCTAGTGCCAAAGCTTCCTCTGCCTCCATGCTTGATTCTGGAAACTTTGTACTATTCAGTCAAAATTCCAGCATCATATGGCAGAGTTTCGATCACCCAACGGATACTTTGTTAGTGAATCAATCTCTTCCTAATGGACATGAACTGGTCTCTAGTTCATCGCAGAACAACCACTCAAGTGGACGGTATCGTCTCAAGATGCAGGATGATGGAAATCTTGTTCAGTATCCAGTAGACACAAGTGACACATCAGCGGATGCTTACTGGGCCTCTCAAACTTCCAATTTTGGTTTCGAAACTCATCTTTATCTCAACCATACAGGTTCGCTGCAGATTGTGAGTGATAAGAGGCTTATGCAGACTGTCAATGATGAGTCATCTTTGCCTAACGATGGGGACCGGGTCACACATCGTGCAACCCTGGATTCTGATGGGAGATTTCGGGTGTATGCGCATTTTAACAATGGCAGTTTCGAAAATGTTTGGCAGGCGGGGAAAGAATATGCATGTGGACTAAAAGGTTTTTGTGGCTTCAATACCTTCTGCACATTCAATGACATCCAACCGGAGTGCGAGTGTATTTGggattttaagttaaaagatcCAACCGACTCCACTGAGGGCTGTAAAAGGAGCTTTCAAAAAGAAGATTGTGTTGGGGAGGAAGATAGCGCAACCTTTTATGAGATGAAGCAGATGGAGGGTAAAATTATATGGTCGGATAATCCTTATTTCAAGGCTGAAATGACACAAGAAGATTGCTCCTCTGCTTGTTTGGCTGATTGCAATTGTGAGGCTATATTTTATGACAACAAGGAAGGAAGCTGCATGAAACAGAGGCTGCCTTTGAGATATCTCCGTAGGCCAAGGGAAAACGAACTTGGCGTTGGCGCCGTGCTATTCTTGAAGGTAGGAAACAGGAGCCTCGTGAACGGGACGGGGAATGATAATCCTGTGCCTCAACAATCATCTCCAATCAAGACTACAAGTAACAAAGCAACGGTGCAGATTATTGTCATTACATCCGTATTTTCTCTGCTTTTATGTTCAACCATCCTCGTCTCCAGCCATTACATGTACAAGATTCGGGTACTGAGGTATAAAAGGCTGATGGAGACTCACAACTTGGGCCTCAATGAAGAGGTGACTTTGAGAAGGTTTTCATACAGCGAGCTGAAAAGAGCAACAAATAATTTCAAACAAGAGTTGGGAAAAGGATCTTTTGGAGCAGTTTACAAAGGGGCTTTGCACAAAGGTAGGAGGTTAATTGCAGTGAAGAGACTAGAGAAGTTGGTGGAAGAAGGAGAAAGGGAGTTTCAAGCAGAAATGCGAGCCATTGGAAAAACCCACCACAGGAACCTAGTTCGCTTGTTGGGTTTCTGTGCCGAGGGTTCTAAAAGGCTCCTGGTTTATGAATACATGCCCAATGGCTCCCTTGGAAACCTTATCTTTGGGGCTCACAGTCAGAGTCGTCCAGAGTGGGATGAGAGAGTAAGAATAGCAGTGGAGATAGCAAGAGGGATCCTGTATCTCCATGAGGAGTGTGAGGCACCAATCATTCATTGTGACATAAAGCCTCAAAACATTTTGATGGATGAGTTCTGGACTGCCAAATTATCAGATTTCGGGCTCGCAAAACTTCTGATGCCAGATCAAACCGGAACCTTCACAAGGGCTAGAGGGACAAGAGGCTATGTGGCCCCTGAATGGAACAAGAACATCCCAATTTCTGTCAAGGCTGATGTTTATAGCTACGGAATAGTGCTGTTGGAAATTTTATGTTGCAGAAGAAACATCGAAGTTCGTGTCTCCGAACCTGAGGTGGTTCTTCTCTCCAACTGGGCTTACAAGTGTTTTGTTGCTGGACAACTTAATAAGCTTTTTCTTCGGGAAGCTGTGGATAAAACTGTCGTAGAAAATATGGTTAAGGTGGCACTTTGGTGTATCCAAGATGAACCTGTTCTGCGCCCAACAATGAAGAGTGTGGTGTTGATGTTAGAAGGGATCGCCGATATAGCAGTTCCTCCTTGTCCCAATTCACAAATACTCAATAACAATCAAGAGTTGCATGGTTAA 2505 0.4371 MKDLRTKSGFDWFFNKIKKESLKASSSIVMDVIAITITLLLLTSAGTRVETQQIQLGASLLPNGTPASWRSPSGQFAFGFYPHGQGNVFVIAIWLVSKETNTVVWTAWRDDPAVTSNAKLQLTTDGKLVLMDGHVKGKVIAGNASAKASSASMLDSGNFVLFSQNSSIIWQSFDHPTDTLLVNQSLPNGHELVSSSSQNNHSSGRYRLKMQDDGNLVQYPVDTSDTSADAYWASQTSNFGFETHLYLNHTGSLQIVSDKRLMQTVNDESSLPNDGDRVTHRATLDSDGRFRVYAHFNNGSFENVWQAGKEYACGLKGFCGFNTFCTFNDIQPECECIWDFKLKDPTDSTEGCKRSFQKEDCVGEEDSATFYEMKQMEGKIIWSDNPYFKAEMTQEDCSSACLADCNCEAIFYDNKEGSCMKQRLPLRYLRRPRENELGVGAVLFLKVGNRSLVNGTGNDNPVPQQSSPIKTTSNKATVQIIVITSVFSLLLCSTILVSSHYMYKIRVLRYKRLMETHNLGLNEEVTLRRFSYSELKRATNNFKQELGKGSFGAVYKGALHKGRRLIAVKRLEKLVEEGEREFQAEMRAIGKTHHRNLVRLLGFCAEGSKRLLVYEYMPNGSLGNLIFGAHSQSRPEWDERVRIAVEIARGILYLHEECEAPIIHCDIKPQNILMDEFWTAKLSDFGLAKLLMPDQTGTFTRARGTRGYVAPEWNKNIPISVKADVYSYGIVLLEILCCRRNIEVRVSEPEVVLLSNWAYKCFVAGQLNKLFLREAVDKTVVENMVKVALWCIQDEPVLRPTMKSVVLMLEGIADIAVPPCPNSQILNNNQELHG 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1032 834 Gene3D - 48 174 IPR036426 -
Ssu6g1032 834 Gene3D Transferase(Phosphotransferase) domain 1 617 817 - -
Ssu6g1032 834 SUPERFAMILY alpha-D-mannose-specific plant lectins 200 260 IPR036426 -
Ssu6g1032 834 SMART serkin_6 540 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1032 834 Pfam Protein kinase domain 542 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1032 834 PIRSF SRK 24 833 IPR024171 GO:0004674
Ssu6g1032 834 ProSitePatterns Serine/Threonine protein kinases active-site signature. 662 674 IPR008271 GO:0004672|GO:0006468
Ssu6g1032 834 Coils Coil 568 588 - -
Ssu6g1032 834 ProSiteProfiles Protein kinase domain profile. 540 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1032 834 Gene3D Phosphorylase Kinase; domain 1 505 616 - -
Ssu6g1032 834 SMART blect_4 60 176 IPR001480 -
Ssu6g1032 834 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE LECRK1 46 824 - -
Ssu6g1032 834 ProSiteProfiles Bulb-type lectin domain profile. 51 174 IPR001480 -
Ssu6g1032 834 Pfam D-mannose binding lectin 102 186 IPR001480 -
Ssu6g1032 834 ProSitePatterns Protein kinases ATP-binding region signature. 546 569 IPR017441 GO:0005524
Ssu6g1032 834 SUPERFAMILY Hairpin loop containing domain-like 375 421 - -
Ssu6g1032 834 CDD STKc_IRAK 546 812 - -
Ssu6g1032 834 SUPERFAMILY alpha-D-mannose-specific plant lectins 103 192 IPR036426 -
Ssu6g1032 834 CDD PAN_AP_plant 360 447 - -
Ssu6g1032 834 PANTHER RUST RESISTANCE KINASE LR10-RELATED 46 824 IPR045874 GO:0004672
Ssu6g1032 834 Gene3D - 177 311 IPR036426 -
Ssu6g1032 834 ProSiteProfiles Bulb-type lectin domain profile. 177 305 IPR001480 -
Ssu6g1032 834 SUPERFAMILY Protein kinase-like (PK-like) 524 810 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1032 Ssu-Chr6 16859782 16862773 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1032 527 821 Receptor kinase-like Gene Family AT5G38280 44.554 4.19e-69 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu6g1032 Pkinase 7.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1032 - - gmx:100815958 1224.15