Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1031 ATGGCCTCCATACCCGTTCTGTTGTCACTGTTGTTCATGTTATATGCAAAAGAAGGCACATGTGAAAGTCGAATTGAGTTGGGGTCTTGGCTCTCTCCTGAAGGCAGTCACAGTTCATGGGCATCAGATTCTGGCCATTTTGCTTTCGGCTTTTACTCACAAGGTAATGGCTACGCTGTTGGAATATGGCTGGTTAGTGGTAATCCACCTGAAAAAACTATTGTCTGGACTGCTAACCGTGATAGCCCCCCACTCTCCCCCAATTCCACGTTGAACTTGACCAAGACCGGCCTGCGGCTTTTCACGAGTGGGAAGGAAGGCCAGGATCTCATTTCAAATCTTGCAGCAGTAACTTCGGCTTCTATGCTTGATTCTGGCAACTTTGTGCTCTATATTGATACCGATACTGTTGCCTGGCAAAGCTTTGATCATCCAACTGACACCCTATTAGGGGGCCAGAATTTAGGTACCAATGGCAAACTGGTTTCTAGTGTGTCCAAATTAGACCATTCGAGTGGACGTTTCTTTTTCATCATGCAATCTGATGGAAACCTCGTTGCTTACCCTGTGAACAGCACAGCAAGTCCCCAAGATTCTTACTGGGCTTCAAATACTACAGATTCAACTTACCAACAGCTCAGTCTTAATGTCTCGGGCTTTCTTTACCTTAGTGGTGCCGGTAGGCTTCACTTTCTTACCGGTATCATCAGCCTTGAAAAGAAATCACACAACACAAGTTCAATCTACCGTGCAACAGTTGATGTAGACGGGATCTTGATGTTGTTTGAGCACCAATTTGAGAGCAATGGTAGCAGCTCACATGTCCAAGAACTGTGGAGAGTCTTGCTTGACAAATGTCAAATCAAGGGGTTTTGTGGCTTCAACAGTTACTGCTCAAACGTAAGAGGCGATGCCGAGTGTGAGTGTTTTCCTGGTTTCGTCCACTGCAAAAGCAGGGGGAACGTGTCTCTGCCTCTGAACTGCGTACCGGCCCATAACAAAGAGGGTTGCGAAAGCAGTGAAGACCCAACAATTTCGTATAATATTATTCGGTGGGAAAATATGTATTATAGTGATAGTGATACTCCATATTTTGTTAAACTGGTGGAGGAGGAAGAGTGCGAGAAATCTTACAGGGAAGATTGTGATTGCATGGCAGCATTATATTTGGACGGCAAATGCAGAAAATACAGACTTCCGCTAACATATGGCAGAAGGGTTCAAAATCGAGTGACCGTGGCCTTCTTCAAGATGCCTTTAGGTCCAACTCCAAACAACTCCACACAGAAGCCTTGGATCGTTGTGGATAACAAGAGAAGACTGATAATGATTCTAACCTTTACTTTGGGTTGCATTTCATTGTTATCTTTTGTCTTTGCAGGGTTCATTTTCTTCACTTACAAGCGGCATGTTTATAGGTATACAACGTTGTCTACAAGTGAGAATCTGGGATTTACTGAAGAATGTTCTTTGCGTCCATTTTCTTTTGATGAGCTTGAGAAAGCGACTGGAGGCTTCACGGAGGAGATAGGGAGAGGGTCCTTTGGAGCGGTTTATAGAGGCACAATTGGTGACAGTAACAGAAGTATCGCTGTCAAGAGATTGGAGAGAGTTGCTGATGAAGGGGAGAGGGAATTCCGAACTGAGATTACTGCCATTGCTCGAACACATCATAGGAATTTGGTTAAGCTCATTGGTTTTTGCATCGATGGATCTAGGAAGCTTCTTGTTTATGAATATGTTGGCAACGGGTCTTTTGCAAATCTTCTCTTCAATGATGAGAAGCACATATCTTGGGGAGACAGACTAAAAATGGCGTTGGACGTTGCTAGAGGAGTCCTGTATCTACACGAAGAGTGTGAGGTCCGTATTATCCATTGCAATATAAATCCTCGAAATATACTTATGGATGAAGCGTGGACTGCAAAGATCTCTGATTTTGGATTGGCAAGGCTACTGAAGCCGCACcattcaagaattaaaaaagaggaTGATGGGACAAGCAAGTACTTGGCACCTGAATGGCAGAAGGATGCACCAGTATCAGTAAAATTTGACATTTACAGTTTTGGGATGGTACTATTGGAGATTGTCTGCCGCAGAAGCAGCATAGAAATGAATGTTTCCTCACCAGAGGAGATACATTTTTCCAGCTGGGTATACCAATGCTTTGCAGAAGGGCAGTTAAGTAAGCTTgtcaaagaagatgaagaaggtgTAGAGTGGATGATTTTGGAAAGAATGGTGAAGGTGGGGTTGTGGTGTGTGCAAGAAGATCCGCCTCTTCGTCCTTCAATCAAGAATGTCATCTTGATGTTGGAAGGATTGAAAGATATTCCAATTCCTCCCTCTCCAGCCCACctccttaaataa 2373 0.4311 MASIPVLLSLLFMLYAKEGTCESRIELGSWLSPEGSHSSWASDSGHFAFGFYSQGNGYAVGIWLVSGNPPEKTIVWTANRDSPPLSPNSTLNLTKTGLRLFTSGKEGQDLISNLAAVTSASMLDSGNFVLYIDTDTVAWQSFDHPTDTLLGGQNLGTNGKLVSSVSKLDHSSGRFFFIMQSDGNLVAYPVNSTASPQDSYWASNTTDSTYQQLSLNVSGFLYLSGAGRLHFLTGIISLEKKSHNTSSIYRATVDVDGILMLFEHQFESNGSSSHVQELWRVLLDKCQIKGFCGFNSYCSNVRGDAECECFPGFVHCKSRGNVSLPLNCVPAHNKEGCESSEDPTISYNIIRWENMYYSDSDTPYFVKLVEEEECEKSYREDCDCMAALYLDGKCRKYRLPLTYGRRVQNRVTVAFFKMPLGPTPNNSTQKPWIVVDNKRRLIMILTFTLGCISLLSFVFAGFIFFTYKRHVYRYTTLSTSENLGFTEECSLRPFSFDELEKATGGFTEEIGRGSFGAVYRGTIGDSNRSIAVKRLERVADEGEREFRTEITAIARTHHRNLVKLIGFCIDGSRKLLVYEYVGNGSFANLLFNDEKHISWGDRLKMALDVARGVLYLHEECEVRIIHCNINPRNILMDEAWTAKISDFGLARLLKPHHSRIKKEDDGTSKYLAPEWQKDAPVSVKFDIYSFGMVLLEIVCRRSSIEMNVSSPEEIHFSSWVYQCFAEGQLSKLVKEDEEGVEWMILERMVKVGLWCVQEDPPLRPSIKNVILMLEGLKDIPIPPSPAHLLK 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1031 790 Pfam D-mannose binding lectin 73 160 IPR001480 -
Ssu6g1031 790 SUPERFAMILY alpha-D-mannose-specific plant lectins 172 262 IPR036426 -
Ssu6g1031 790 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 206 IPR036426 -
Ssu6g1031 790 Pfam S-locus glycoprotein domain 242 314 IPR000858 GO:0048544
Ssu6g1031 790 ProSiteProfiles Protein kinase domain profile. 504 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1031 790 ProSiteProfiles Bulb-type lectin domain profile. 22 143 IPR001480 -
Ssu6g1031 790 ProSitePatterns Protein kinases ATP-binding region signature. 510 533 IPR017441 GO:0005524
Ssu6g1031 790 Gene3D - 20 144 IPR036426 -
Ssu6g1031 790 CDD EGF_CA 284 317 - -
Ssu6g1031 790 Gene3D - 146 287 - -
Ssu6g1031 790 Gene3D Phosphorylase Kinase; domain 1 469 580 - -
Ssu6g1031 790 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 6 788 - -
Ssu6g1031 790 SMART blect_4 31 145 IPR001480 -
Ssu6g1031 790 Gene3D Transferase(Phosphotransferase) domain 1 582 780 - -
Ssu6g1031 790 PANTHER S-RECEPTOR KINASE-LIKE PROTEIN 6 788 - -
Ssu6g1031 790 Pfam Protein kinase domain 507 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1031 790 SUPERFAMILY Protein kinase-like (PK-like) 486 774 IPR011009 -
Ssu6g1031 790 PIRSF SRK 1 790 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1031 Ssu-Chr6 16856681 16859053 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1031 423 785 Receptor kinase-like Gene Family AT4G18250 37.433 8.29e-64 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu6g1031 Pkinase 1.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1031 - - cam:101496142 928.317