Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1029 ATGGATATCATTGCTATAACTATCGCCTTCCTGCTGCTCATGTCTACAGGCACAAGAGTTGAAACGAAGCAGATACAACCCGGTGACTCACTTCTTCCAAACAGTACTGCTTGGCTTTCCCCTTCCGGTCAATTTGCATTTGGTTTTTATCCGCAAGAGCAAGTCAATGTCTTTGTCATTGCAATTTGGTTGGTTGAGACCAACACAGTGGTATGGACTGCAAGACGGGATGATCCTGCGGTCACCTCAAATGCAAAGCTACATCTAACCATGGATGGCAAACTCGTACTAATAGATGAGCAAGTAGAAGGGAAGGTCATTGCAGTTAATGATACTGCGAAAGCTTCCTCTGCCTCCATGCTTGATTCTGGCAAGTTTGTACTATTCGACAATAATAACATGATCATATGGCAGAGTTTCGATTACCCAACGGATACTTTGTTAGGGGGTCAATCTCTTCCTAATGGACATCAACTGGTCTCTAGTTCATCGCAAAACAACCACTCAAGTGGACGGTATCGTCTCAAGATGCAGGATGATGGAAATCTTGTTCTGTATCCAGTAGACACAAGTGACACATCAGCGGATGCTTACTGGGCCTCCCAAACTTCCAATTTTGGTTTCGGAACTCATCTTTATCTCAACCAAACAGGTTCACTGCAGATTATGAGTGATGGGGGGCTTTTGCAGACTGTCAATGTTGAGTCATCTTTGGCTAACAATGGGGACCGGATCACTTATCGTGCAACCTTGGATCCTGATGGGATATTTCGCCTGTATGCGCATTTTAACAATGGCAGTAGCCCAACTGTTTGGCAGGCGGGGACAGAATATTCATGTGGACTAAAAGGTTCTTGTGGCCTTAACACCTTCTGCACACTCAATGACATGCAACCAGAGTGCATGTGTATTCCAGGTTTTGAACGACAATATCCAACCAATTCCACTCTAGACTGCAATAGGATATTTCCGAAAGAAGATTGTACTGGGGAGAATGAGAAAGATAGCGCAACCTCCTATGACATGATGCCtttgaacaataatattatatggtCGGATAATCCTTATTTCAAGGCTGAAAAAAGGACACAAGAAGATTGCTTGGCTGCTTGTTTGGCTGATTGCAATTGTGAGGCTATATTTTATGACAATAGGGAACGAAGCTGCATGAAACAGAGGCTGCCTTTGAGATATCTCCGTAGGCCAAAGGAAGATGAAGTTGGCGCTGGCGCCCTGCTATTCTTGAAGGTAGGAAACAGGACCCTCGAGAACGGGACTGGGAATGATAATCCGATCAAGATTACAAGTAACAAAGCAACAGTGCACATTATTGTCATTACATCCGTATTTTCTCTGCTTTTATGTTCAACCATTCTCATCTCCATTCATTACATGTACAAGATTCGAATATTGAGGTATAAAAGGCTGATGGAGACTCAGAACTTGGGCCTCAATGAAGACGTGACTCTCAGAAGATTTTCATACAGCGAGCTGAAAAGAGCAACAAATAATTTCAAACAAGAATTGGGTAAAGGATCTTTTGGAGCAGTTTACAAGGGGGCTTTGCACAAAGGTAGGAGGTTGATTGCAGTGAAGAGACTAGAGAAGTTAGTGGAAGAAGGAGAAAGGGAGTTTCAAGCAGAAATGAGAGCCATTGGAAAAACCCACCACAGGAACCTAGTTCGCTTGTTGGGTTTCTGTGCCGAGGGTTCTAAAAGGCTTCTGGTTTATGAGTACATGCCCAACGGTTCCCTTGGAAACCTTATCTTTGGGGCTCACAGTCAGAGACGTCCAGAGTGGGATGAGAGAGTAAGGATAGCAGTGGAGATAGCAAGAGGGATCCTGTATCTCCATGAAGAGTGTGAGGCACCAATCATTCATTGTGACATAAAGCCTCAAAACATTTTGATGGATGAGTTTTGGACTGCCAAGATATCTGATTTCGGGCTAGCCAAACTTCTCATGCCTGATCAAACCAGAACATTCACAGGGGCTAGAGGGACAAGAGGGTATGTGGCCCCGGAGTGGCACAAGAACAGCCCAATATCTGTCAAGGCTGATGTTTATAGCTACGGAATAGTGCTGTTGGAAATTTTATGTTGCAGACGAAACATCGAAGTTCGTGTCTCACAACCTGAGGCGGCTCTTCTCTCCAACTGGGCTTATAAGTGTTTTGTTACCGGACAGCTTAATAAGCTTTTCCTTTGGGAAGCTGTGGATAAAACTGTCGTGGAAAACATGGTTAAGGTGGCACTTTGGTGTGTCCAAGATGAACCTGCTCTGCGCCCAACAATGAAGAGTGTGGTGTTGATGTTAGAAGGGATCACCGATATAGCAATTCCTCCTTGTCCCAATTCACAAATATTCAATAACAATCGAGAGTTGCATGATTAA 2394 0.4378 MDIIAITIAFLLLMSTGTRVETKQIQPGDSLLPNSTAWLSPSGQFAFGFYPQEQVNVFVIAIWLVETNTVVWTARRDDPAVTSNAKLHLTMDGKLVLIDEQVEGKVIAVNDTAKASSASMLDSGKFVLFDNNNMIIWQSFDYPTDTLLGGQSLPNGHQLVSSSSQNNHSSGRYRLKMQDDGNLVLYPVDTSDTSADAYWASQTSNFGFGTHLYLNQTGSLQIMSDGGLLQTVNVESSLANNGDRITYRATLDPDGIFRLYAHFNNGSSPTVWQAGTEYSCGLKGSCGLNTFCTLNDMQPECMCIPGFERQYPTNSTLDCNRIFPKEDCTGENEKDSATSYDMMPLNNNIIWSDNPYFKAEKRTQEDCLAACLADCNCEAIFYDNRERSCMKQRLPLRYLRRPKEDEVGAGALLFLKVGNRTLENGTGNDNPIKITSNKATVHIIVITSVFSLLLCSTILISIHYMYKIRILRYKRLMETQNLGLNEDVTLRRFSYSELKRATNNFKQELGKGSFGAVYKGALHKGRRLIAVKRLEKLVEEGEREFQAEMRAIGKTHHRNLVRLLGFCAEGSKRLLVYEYMPNGSLGNLIFGAHSQRRPEWDERVRIAVEIARGILYLHEECEAPIIHCDIKPQNILMDEFWTAKISDFGLAKLLMPDQTRTFTGARGTRGYVAPEWHKNSPISVKADVYSYGIVLLEILCCRRNIEVRVSQPEAALLSNWAYKCFVTGQLNKLFLWEAVDKTVVENMVKVALWCVQDEPALRPTMKSVVLMLEGITDIAIPPCPNSQIFNNNRELHD 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1029 797 SUPERFAMILY alpha-D-mannose-specific plant lectins 62 160 IPR036426 -
Ssu6g1029 797 Pfam S-locus glycoprotein domain 237 310 IPR000858 GO:0048544
Ssu6g1029 797 PIRSF SRK 1 797 IPR024171 GO:0004674
Ssu6g1029 797 Gene3D - 144 279 IPR036426 -
Ssu6g1029 797 ProSiteProfiles Protein kinase domain profile. 503 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1029 797 Gene3D Transferase(Phosphotransferase) domain 1 580 780 - -
Ssu6g1029 797 Coils Coil 531 551 - -
Ssu6g1029 797 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Ssu6g1029 797 SUPERFAMILY alpha-D-mannose-specific plant lectins 165 260 IPR036426 -
Ssu6g1029 797 SMART serkin_6 503 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1029 797 PANTHER RUST RESISTANCE KINASE LR10-RELATED 22 788 IPR045874 GO:0004672
Ssu6g1029 797 SUPERFAMILY Protein kinase-like (PK-like) 488 773 IPR011009 -
Ssu6g1029 797 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE LECRK1 22 788 - -
Ssu6g1029 797 ProSiteProfiles Bulb-type lectin domain profile. 144 272 IPR001480 -
Ssu6g1029 797 ProSitePatterns Protein kinases ATP-binding region signature. 509 532 IPR017441 GO:0005524
Ssu6g1029 797 CDD STKc_IRAK 509 775 - -
Ssu6g1029 797 Gene3D - 18 142 IPR036426 -
Ssu6g1029 797 Pfam D-mannose binding lectin 69 153 IPR001480 -
Ssu6g1029 797 ProSiteProfiles Bulb-type lectin domain profile. 22 141 IPR001480 -
Ssu6g1029 797 Pfam Protein kinase domain 505 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1029 797 Gene3D Phosphorylase Kinase; domain 1 468 579 - -
Ssu6g1029 797 SMART blect_4 29 143 IPR001480 -
Ssu6g1029 797 SMART blect_4 144 278 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1029 Ssu-Chr6 16802978 16805371 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1029 490 784 Receptor kinase-like Gene Family AT5G38280 44.224 7.80e-69 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu6g1029 Pkinase 6.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1029 - - gmx:100815958 1186.4