Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1028 ATGCTTTCTTGCGCTTCCAAGTTCCCAGTTTCCACGCTCAAAAACGAAGGATTTGGGGTGTACACAAGTCGGGTTGAGTCGGACTTTCCTAAACCCATTATCCAAAATAGTACAgGAAAGGAGTTTCCAAATCCTATGGCCTCTGTACCCGTTCTGTTGTCACTGTTGTTCATGTTATTTGCAAAAGAAGGCACAGGCACAGGCACAGGTGAAAGCAGAATAGAGTTGGGGTCTTGGCTCTCTCCTGAAGGCAGTCACAGTTCATGGGCATCAGATTCTGGCCATTTTGCTTTCGGCTTTTACTCACAAGGTAATAGCTTTGCTGTTGGAATATGGCTGGTTAGTGGTAGTCCACCTGAAAAAACTGTTGTCTGGACTGCTAACCGTGATAGCCCCCCACTCTCCCCCAATTCCAAGTTGAACTTGACCAAGAATGGCCTGCGACTGTTCACAAGTAGGAGGGAAGGCCAAGATCTCATTTCAAATTATACAGCAATAACTTCGGCTTCTATGCTTGATTCTGGCAACTTTGTGCTCTATGATGATACCGATACTGTTGCCTGGCAAAGCTTCGATGAACCAACTGACACCATATTAGGAGGCCAGAATTTAGGTTATGGTGGAATTCTGTTTTCTAGTGTGTCCCAATTAAACCATTCGAAAGGACGTTTCTATTTCGCCATGCAACCTGATGGAAACCTGGTTGCTTACCCTAGGAACCAACAAATAAGTCCCCAAGATGCTTACTGGGCTTCAAATACTGCAGGTTCAACTTACCAACAGCTCAGTCTTAATGTCTCGGGCTTTCTTTACCTTAGTGGTGCTGGTGGGTTTCACTTTCTTACCGATAACATCAGCCTTGGAAAGAAATCACACAACACAAGTTCAATCTACCGTGCAACAGTTGATGTCGACGGGAACTTTATATTGTATGAGCACCAATTTGAGGGCAATGGTAGCAGCTCACATGTCCAACTACTGTGGAGAGCTTTACATGACAAATGTCAAATAAAGGGGTTCTGTGGCTTCAACAGTTACTGCTCAAACGTAAGAGGCGATGCCGAGTGCGAGTGTTTTCCTGGTTTCGTCCACTCCAACAACAGGGGTAACGTGTCTCTGCCTCTGGACTGCGTACTGGCCCATAACAAAGAGGGTTGCGAAAGCAGTGAAGACCCAAcgattttctataatattacTCGGTTGGAAAATATGTATTATAGTGATAGTGATGCTCCATATTCTGTCATACCGATGAAGAAGGAAGAGTGCGAGAAGTCTTTCCTGGAAGATTGTGATTGCATGGCAGTATTATATTCCGACGGCAACTGCAATAAATACAGACTCCCGCTAACATATGGCAGAAGGGTTCAAAATCCAGTGACCGTGGCCCTCTTCAAGACTCCAAACAACTCCACACAGAAGTCTAGGATCGTTGTGGATAACAAGACAAGGCCGATAATGATTCTAACCTTTACTTTGGGTTGCATTTCATTGTTATCTTTGGTCTTTGCAGGGTTCATTTTCTCCACTTATAAGCGGCATGTTTATAGGTATACAACGTTGTCTACAAATGAGAATGTGGGATTTGCTGAAGAATGTTCTTTGCGTCCATTTTCTTTTGATGAACTTGAGAAATGGACTGGAGGCTTCACGGAGGAGATAGGGAGAGGATCATTTGGAGCGGTTTATAAAGGCACAATAGGTGACAGTAACAGAAGTGTCGCTGTCAAGAGATTGGAGAGAATTGCTGATGAAGGGGAGAGGGAATTCCGAACTGAGATTACTGCCATTGCTCGAACACATCATAGAAATTTGGTTAAGCTCATTGGTTTTTGCATCGATGGAGCTAGGAAGCTTCTTGTTTATGAATATGTTAGCAACGGGTCCCTTGCAAGTCTTCTCTTCAATGATGAGAAGCACATATCTTGGAGAGACAGACTAAAAATTGCATTGGACGTTGCTAGAGGAGTCCTGTATCTACATGAAGAGTGTGAGGTCCGTATTATCCATTGCAATATAAATCCTCGAAATATACTTATGGATGAAACGTGGATTGCAAAGATCTCTGATTTTGGATTGGCAAGGCTACTGAAGCCGGACCAATCAAGAATGCAAAAAGAGGATGATGGGACAAGCAAGTACTTGGCACCTGAATGGCAGAAGGATGCACCCGTATCAGTAAAATTTGACATTTACAGTTTTGGGATGGTACTATTGGAGATTGTCTGCCGCAGAAGCAGCATAGAAATGAATGTTTCCTCACCAGAGGAGATACATTTTTCCAGCTGGGTATACCAATGCTTTGCAGAAGGGCAGTTAAATAAGCTTgtcaaagaagatgaagaaggtgTAGAGTGGATGATTTTGGAAAGAATGGTGAAGGTGGGGTTGTGGTGTGTGCAAGACGATCCGCCTCTTCGTCCTTCAATGAAGAATGTCATCTTGATGTTGGAAGGATTGAAAGATATTCCAATTCCTCCCTCTCCAGCCCACctccttaaataa 2505 0.4295 MLSCASKFPVSTLKNEGFGVYTSRVESDFPKPIIQNSTGKEFPNPMASVPVLLSLLFMLFAKEGTGTGTGESRIELGSWLSPEGSHSSWASDSGHFAFGFYSQGNSFAVGIWLVSGSPPEKTVVWTANRDSPPLSPNSKLNLTKNGLRLFTSRREGQDLISNYTAITSASMLDSGNFVLYDDTDTVAWQSFDEPTDTILGGQNLGYGGILFSSVSQLNHSKGRFYFAMQPDGNLVAYPRNQQISPQDAYWASNTAGSTYQQLSLNVSGFLYLSGAGGFHFLTDNISLGKKSHNTSSIYRATVDVDGNFILYEHQFEGNGSSSHVQLLWRALHDKCQIKGFCGFNSYCSNVRGDAECECFPGFVHSNNRGNVSLPLDCVLAHNKEGCESSEDPTIFYNITRLENMYYSDSDAPYSVIPMKKEECEKSFLEDCDCMAVLYSDGNCNKYRLPLTYGRRVQNPVTVALFKTPNNSTQKSRIVVDNKTRPIMILTFTLGCISLLSLVFAGFIFSTYKRHVYRYTTLSTNENVGFAEECSLRPFSFDELEKWTGGFTEEIGRGSFGAVYKGTIGDSNRSVAVKRLERIADEGEREFRTEITAIARTHHRNLVKLIGFCIDGARKLLVYEYVSNGSLASLLFNDEKHISWRDRLKIALDVARGVLYLHEECEVRIIHCNINPRNILMDETWIAKISDFGLARLLKPDQSRMQKEDDGTSKYLAPEWQKDAPVSVKFDIYSFGMVLLEIVCRRSSIEMNVSSPEEIHFSSWVYQCFAEGQLNKLVKEDEEGVEWMILERMVKVGLWCVQDDPPLRPSMKNVILMLEGLKDIPIPPSPAHLLK 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1028 834 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 46 832 - -
Ssu6g1028 834 Pfam D-mannose binding lectin 122 206 IPR001480 -
Ssu6g1028 834 Pfam S-locus glycoprotein domain 287 364 IPR000858 GO:0048544
Ssu6g1028 834 ProSiteProfiles Bulb-type lectin domain profile. 71 192 IPR001480 -
Ssu6g1028 834 PIRSF SRK 43 834 IPR024171 GO:0004674
Ssu6g1028 834 Gene3D - 195 339 - -
Ssu6g1028 834 Gene3D Phosphorylase Kinase; domain 1 512 624 - -
Ssu6g1028 834 ProSitePatterns Protein kinases ATP-binding region signature. 554 577 IPR017441 GO:0005524
Ssu6g1028 834 SUPERFAMILY Protein kinase-like (PK-like) 531 818 IPR011009 -
Ssu6g1028 834 ProSiteProfiles Protein kinase domain profile. 548 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1028 834 SUPERFAMILY alpha-D-mannose-specific plant lectins 122 254 IPR036426 -
Ssu6g1028 834 SUPERFAMILY alpha-D-mannose-specific plant lectins 220 311 IPR036426 -
Ssu6g1028 834 Pfam Protein tyrosine and serine/threonine kinase 550 814 IPR001245 GO:0004672|GO:0006468
Ssu6g1028 834 Gene3D Transferase(Phosphotransferase) domain 1 625 825 - -
Ssu6g1028 834 Gene3D - 70 192 IPR036426 -
Ssu6g1028 834 PANTHER S-RECEPTOR KINASE-LIKE PROTEIN 46 832 - -
Ssu6g1028 834 SMART blect_4 80 194 IPR001480 -
Ssu6g1028 834 CDD EGF_CA 333 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1028 Ssu-Chr6 16795818 16800400 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1028 482 829 Receptor kinase-like Gene Family AT4G18250 38.440 1.51e-64 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu6g1028 PK_Tyr_Ser-Thr 5.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1028 - - cam:101496142 934.48