Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1025 ATGGTGCAATCAAAGAAGTTCAGAGGTGTCAGGCAGCGCCATTGGGGTTCATGGGTATCTGAGATTCGCCATCCACTTCTGAAGAGAAGGGTGTGGCTGGGGACATTTGAAACTGCAGAAGAAGCGGCTAGAGCCTATGATCAAGCTGCGATTCTGATGAGTGGGCGAAATGCCAAAACCAATTTCCCAATAACCCAAACTCCCGAAGGTGACCCAAAGAGCACTACGAGTGAGGACATCCCTTCCACCTCGAAGGATCTGGAGGAAATCCTGCATGCAAAGCTTCGAAAATGTGGCAAGGTACCCTCACCTTCCATGACCTGTTTGAGGCTCGACACAGAGAACTCCCACATCGGAGTGTGGCAAAAGCGTGCTGGGCGTCGTTCTGATTCAAACTGGGTCATGACGGTTCAGCTAGGAAAAAAGAGTGCCAATGAGGCTCAAGCTGATAGCAGCAGTAGTAGTTCTCTTTCTCTACCTTCTTCTGATCATCACCAGTCTCCATCGGATGTGACAGGTCATCATCAGGAAGTGGTGAGGGCAGAGATTGATGAAGAGGAGAGAATTGCCCTTCAGATGATAGAGGAACTCCTCAACGACAGGAACTGCCCCAGCCCTAGCCCATCATTTAACAACATTCAAGAAAAGGGTGGTGATCGTGACCCCTTTTTTCTTTAA 678 0.4926 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSTTSEDIPSTSKDLEEILHAKLRKCGKVPSPSMTCLRLDTENSHIGVWQKRAGRRSDSNWVMTVQLGKKSANEAQADSSSSSSLSLPSSDHHQSPSDVTGHHQEVVRAEIDEEERIALQMIEELLNDRNCPSPSPSFNNIQEKGGDRDPFFL 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1025 225 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Ssu6g1025 225 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Ssu6g1025 225 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Ssu6g1025 225 MobiDBLite consensus disorder prediction 200 225 - -
Ssu6g1025 225 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Ssu6g1025 225 MobiDBLite consensus disorder prediction 61 83 - -
Ssu6g1025 225 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Ssu6g1025 225 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Ssu6g1025 225 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 208 - -
Ssu6g1025 225 MobiDBLite consensus disorder prediction 61 81 - -
Ssu6g1025 225 MobiDBLite consensus disorder prediction 141 174 - -
Ssu6g1025 225 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Ssu6g1025 225 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Ssu6g1025 225 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 208 - -
Ssu6g1025 225 MobiDBLite consensus disorder prediction 141 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1025 Ssu-Chr6 16749323 16750238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1025 1 199 AP2-EREBP Transcription Factor Family AT1G15360 60.680 3.40e-80 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu6g1025 AP2 9.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1025 - - gmx:100787517 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1025 6 16749323 16750238 Ssu1g3454 1 88671779 88672899 ECH
Ssu6g1025 6 16749323 16750238 Ssu5g0578 5 12806947 12807940 ECH
Ssu6g1025 6 16749323 16750238 Ssu6g1025 6 16749323 16750238 ECH
Ssu6g1025 6 16749323 16750238 Ssu1g1895 1 50808311 50810066 PCT