Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1018 ATGAAGAAGGTGAGGAGAAAGATCGGGAAGTATGAGGTGGGTCGAACTATTGGTGAAGGCACGTTCGCGAAGGTTAAGTTCGCGAAAAACATTGAGACAGGGGAGAGCGTGGCTATCAAGGTGATGGCTAAGACCACCATTCTCCGGCACAGAATGGTTGAACAGattaaaagagaGATATCCATTATGAAGATTGTCAGGCATCCTAATATAGTTAGATTGCATGAGgttTTGGCTAGCCAGACCAAGATCTACATAATCCTTGAATTTGTAATGGGAGGGGAactatatgataaaattGTTCAGCAGGGAAAGCTTTCTGAAAATGAGTCTAGGCGCTTCTTTCAACAACTTATAGATGCTGTTGATCATTGTCATAGAAAGGGTGTGTACCATAGAGACTTGAAGCCTGAAAACCTTCTTCTTGATGCTTATGGAAATTTGAAGGTTTCTGACTTTGGATTGAGTGCATTGACTAAACAGGGTGTTGGCCTTCTTCACACCACTTGTGGGACCCCAAATTATGTTGCCCCTGAGGTGCTCAGCAATCAAGGATATGATGGTGCAGCAGCTGATGTCTGGTCATGTGGAATCATCCTATATGTTCTAATGGCTGGATATCTTCCTTTTGAGGAGGCAGACCTTCCAACACTGTACAGAAGGATCAATGCTGCAGAATTTGTTTGCCCATTCTGGTTTTCTGCTGGCACAAAGTCATTCATACATAAAATTCTGGATCCTAATCCTAAAACACGGGTGATAATCGAAGAAATAAGGAAAGATCCTTGGTTCCAGAAAAACTATTTTCCTGTCAAACTTGGGGAAGATGAGCAAGTGAATTTGGATGATGTTCGGGCTGTTTTTGATGATATTGAGGACCAATCTGTTGCTGAACGGTCAGAAATTACTGAGGGAGGTCCTTTGATAATGAATGCATTTGAGATGATTGCCTTATCACAAGGGTTGAATCTTTCACCACTATTTGATAGGCATCAGGATTATGTAAAGCGGCAAACTCGTTTTGTCTCCCGTCAACCAGCAAAAGTTATAATTTCTTCTATTGAAGCTGTTGCAGAGTCAATGGGTCTTAAGGTCTACTCTCGCAATTACAAGgTGAGGCTCGAAGGCGTTTCTGCAAATAAGGTTGGACAATTTGCAGTGGTCTTGGAGGTGTTTGAAGTCGCACCATCCCTTTTCATGGTTGATGTTCGGAAGGCAGCTGGGGATACTTTTGACTACCACAAGTTTTACAAGAATTTTTGTGCCAAACTAGGAAACATTATTTGGAGACCGGCAGGGACTATGCCAAATTCTAATCTGCCTCGGCAAATGACTTTATGA 1341 0.4169 MKKVRRKIGKYEVGRTIGEGTFAKVKFAKNIETGESVAIKVMAKTTILRHRMVEQIKREISIMKIVRHPNIVRLHEVLASQTKIYIILEFVMGGELYDKIVQQGKLSENESRRFFQQLIDAVDHCHRKGVYHRDLKPENLLLDAYGNLKVSDFGLSALTKQGVGLLHTTCGTPNYVAPEVLSNQGYDGAAADVWSCGIILYVLMAGYLPFEEADLPTLYRRINAAEFVCPFWFSAGTKSFIHKILDPNPKTRVIIEEIRKDPWFQKNYFPVKLGEDEQVNLDDVRAVFDDIEDQSVAERSEITEGGPLIMNAFEMIALSQGLNLSPLFDRHQDYVKRQTRFVSRQPAKVIISSIEAVAESMGLKVYSRNYKVRLEGVSANKVGQFAVVLEVFEVAPSLFMVDVRKAAGDTFDYHKFYKNFCAKLGNIIWRPAGTMPNSNLPRQMTL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1018 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Ssu6g1018 446 Pfam Protein kinase domain 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1018 446 Gene3D Transferase(Phosphotransferase) domain 1 2 309 - -
Ssu6g1018 446 ProSiteProfiles Protein kinase domain profile. 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1018 446 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Ssu6g1018 446 SUPERFAMILY Protein kinase-like (PK-like) 8 310 IPR011009 -
Ssu6g1018 446 Pfam NAF domain 307 365 IPR004041 GO:0007165
Ssu6g1018 446 Gene3D Kinase associated domain 1, KA1 310 430 - -
Ssu6g1018 446 PANTHER - 4 443 - -
Ssu6g1018 446 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 4 443 - -
Ssu6g1018 446 CDD CIPK_C 311 421 - -
Ssu6g1018 446 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Ssu6g1018 446 SMART serkin_6 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1018 Ssu-Chr6 16623228 16634093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1018 1 372 CBL-interacting serine-threonine protein kinases AT5G35410 73.118 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Ssu6g1018 Pkinase 1.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1018 - - gmx:100811380 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1018 6 16623228 16634093 Ssu6g1018 6 16623228 16634093 ECH