Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1014 ATGTCGAGCTGCAGTATCGATGTTACGCCTGAGCAACTCTGCTACATCCCCTGCAACTTTTGCAATATCGTTCTTGCGGTGAGTGTTCCATGCAGTAGCCTGTTTGACATTGTGACAGTTCGATGTGGGCACTGCACCAATCTATGGTCCGTGAACATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGgGACCTGGGCACTGCAATCCAGAGTACAGGATTGACACTGGCTCCACGTCGAAATGCAACAACAGGATTGCAATGCGTGCACCTACCACTCATGTAGCTGAGGAAAGGGTTGTGAACCGGCCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAATCAGTTTATAAAGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGAAGCTTTCAGTACAGCTGCAAAGAACtggGCACATTTTCCCCATATTCATTTCGGGCTGATGTTGGAGAGCAACAACCAACCTAAGATGGAGAATgtCTCTGAGAAGCATTTAATGTCAAGGGCTGCGCTATTGAACAAATGA 561 0.4742 MSSCSIDVTPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQGPGHCNPEYRIDTGSTSKCNNRIAMRAPTTHVAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQPKMENVSEKHLMSRAALLNK 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1014 186 PANTHER PROTEIN YABBY 6-RELATED 1 176 IPR006780 GO:0007275
Ssu6g1014 186 SUPERFAMILY HMG-box 103 152 IPR036910 -
Ssu6g1014 186 Gene3D High mobility group box domain 98 155 IPR036910 -
Ssu6g1014 186 Pfam YABBY protein 9 159 IPR006780 GO:0007275
Ssu6g1014 186 PANTHER AXIAL REGULATOR YABBY 5 1 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1014 Ssu-Chr6 16548370 16551813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1014 11 169 C2C2-YABBY Transcription Factor Family AT2G26580 77.358 9.25e-90 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Ssu6g1014 YABBY 3.3e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1014 K25796 - gmx:100804731 381.719