Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1005 ATGCCACGCCCAGGGCCAAGGCCTTACGAGTGCGTGAGGAGAGCTTGGCACAGTGAGCGCCACCAACCCGTGAGAGGTTCCATCATTCAGCAGATTTTCAGGGTCGTCAACGACGCTCACAGGCCCGCGACGAAGAAGAACAAGGAATGGCAGGAGAAGGTCCCCGTGGTCGTTCTCAAGGCTGAAGAAATCATGTACTCCAAAGCCAATTCCGAGGCAGAGTACATGAATCCTGATACGCTCTGGGACCGCCTCAATGATGCCGTCAACACAATCATACGGAGAGACGAGACCACCGAGACAGGAGACCTCTTGCCCCCATGTGTTGAAGCTGCACTAAACCTGGGTTGCAAACCTGTGAGAACTTCCAGAAGTGATCGGCACAATAACCCCAGGACTTACCTTTCTCCAAGAATTCAACCACATCCCTCTGTGCCTCCTAAACCTGTTGGTGGGAATCCCTTGAACTATGCCAAAGCCACAACTTCTGTTGTTTCACCAATTCCTGTATCAGATTCTAGCCATCATACCCACCAGAACAGTAGGGTCATGGGTTCCTCTAGCTACCCCTTCTCGCAAGGCCTCCCTTCTAGTCATCACCAGCCATTGACAATGGAAGCTAGACCCTCATTGAACATGGGTTCAGTTTTCCCTTTGTACTACGGTTTTGAAGCCAGAGAACCTCAACCAAGGACGACCCCTCGAGAAACCACGTGTTCTGATACAATCTTTGTTGGCAGACCAGTCATTCCAGTCCCGGAGCCTTCTGGAATTGGTCTATTGGAAAACTTTTCCTATGGTAGAATCCATCACATTGCAAACAGAATGGCAAAAGAAACTGCTGTAGGCACTACTCAAGAGGAGGCACCGGATAGGGAATGTGATTTATCTTTGAGGCTGGGTCAGTGTCTGCAACCGTGTTCAAGCAGCAAAAGTAGTTCAGCTTATGAAATAGATGATGTTGGTTTACGAGTTTCACCAGAGGGCAGCAAGTTTAGCCATCCATCTTCGCAGAGAAATAGAGAGTTATGTTTTTATCCTAGAGAGACAGGTTATGGTACCCTTGAGTCCTCTTCTAGGAAATGTAACGTAGAGGGTGAAGATCAGAACTCAGAGGCAACTCTTCGGAAGCGCAAAGCACCTTTAGGTAACAACGAGGAGGATGGGCAATTTTGCCGGAATCTAGGGGTCCCATCCAATCGTTTTACTGGTAGGCCAGGTTCGTAG 1227 0.4914 MPRPGPRPYECVRRAWHSERHQPVRGSIIQQIFRVVNDAHRPATKKNKEWQEKVPVVVLKAEEIMYSKANSEAEYMNPDTLWDRLNDAVNTIIRRDETTETGDLLPPCVEAALNLGCKPVRTSRSDRHNNPRTYLSPRIQPHPSVPPKPVGGNPLNYAKATTSVVSPIPVSDSSHHTHQNSRVMGSSSYPFSQGLPSSHHQPLTMEARPSLNMGSVFPLYYGFEAREPQPRTTPRETTCSDTIFVGRPVIPVPEPSGIGLLENFSYGRIHHIANRMAKETAVGTTQEEAPDRECDLSLRLGQCLQPCSSSKSSSAYEIDDVGLRVSPEGSKFSHPSSQRNRELCFYPRETGYGTLESSSRKCNVEGEDQNSEATLRKRKAPLGNNEEDGQFCRNLGVPSNRFTGRPGS 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1005 408 PANTHER COACTIVATOR CBP, KIX DOMAIN-CONTAINING PROTEIN-RELATED 1 405 - -
Ssu6g1005 408 MobiDBLite consensus disorder prediction 120 148 - -
Ssu6g1005 408 MobiDBLite consensus disorder prediction 167 186 - -
Ssu6g1005 408 Gene3D Coactivator CBP, KIX domain 11 80 IPR036529 GO:0003712|GO:0006355
Ssu6g1005 408 PANTHER COACTIVATOR CBP, KIX DOMAIN-CONTAINING PROTEIN-RELATED 1 405 - -
Ssu6g1005 408 MobiDBLite consensus disorder prediction 354 408 - -
Ssu6g1005 408 MobiDBLite consensus disorder prediction 361 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1005 Ssu-Chr6 16377859 16379456 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1005 - - gmx:100806760 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1005 6 16377859 16379456 Ssu1g1758 1 43521909 43531328 PCT