Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0998 ATGGAGCTTCAACTGGGTCTCGCCCTCCCAACCAATCCCTCCAAACTCCTCGACCTCAATTCTCGTGCCCACGACCCCAACTTCCCTTTCAACCATAAATCCCATGCTTTCCACAAGAAACGTAGCTTTTCCCAACTCTTGGAGCATGCAGCAGAAAGTAGCCGCAGAGACGCTACGCTTCCTACTCTGTCTCTCCTCCCTTTAACGCCAAACCACGATGATGATGATCATGATCCACGCAGCCACTGCTCTAATATCACCGAgaaTGAGGAGGAGGAAGGTGTAGAAGGTCCAGTGGGTTGGCCACCCGTAAACTACTGGAGGAAGAAACTTCGTGTTAACGAGGTTGCAGGGAATGATGATCACATGGTATGGGttgatcatcatcatcatggcCATGGTTCTGTTGGCGACGGAGGATCGAATACTCTGTACGTGAAGGTGAAAATGGAGGGTGTGGGAATCGCACGGAAGGTTGATCTCGGCATGCACCAATCGTTTCAGATGCTCAAGGAAACCTTGATGGACATGTTTGGAAAATGTCATCAACAATCAAATAGCTATGAACTGGCTTATGAGGACAAAGAAGGTGACTGGCTTCTTGCAGAAGATGTACCATGGAGGCAAAAGTTTCGTTCGGTGTGCACGAAGACTCAAATTACTGAAGAGCAGCGGATAAATGGCAACAAAATCTTCAATCTTCAGCCTGTCAACTTTGTCAGCTCAGCCTTAGAAAGCCAGATgacgcctttcttggcaccaccactaccacaaccaccgccattgtcaccaccactatcaccgccACCATTATTGCTGTCGCCATCTCCGCagtcaccgtcaccaccaccaccattgctaccaccaccaccaccatcatcgctgccacaactaccaagACTACTGGCATtgccgccaccatcaccactgccacaactaccactcatcattgctgccacaactaccacgaccactagCATCACCTTCatcaccacaagcttcatcaccactactatCGTCACTGTCACCACCACGATCACGATCACGACTACTaacgctgctgccaccaccataagcaatgtcaccaccaccattgactttgccaccaccatcaccattggcaCTGCCACAATCACCGCTAGTATTGCCACAACCACTGCCGTCGGCACCGCCATAACCGTCACTGTCAGCtttaccactaccaccaccatcattgttgtcgtcaccactaccattgtcgtcactacacaaacatatttttaa 1263 0.342 MELQLGLALPTNPSKLLDLNSRAHDPNFPFNHKSHAFHKKRSFSQLLEHAAESSRRDATLPTLSLLPLTPNHDDDDHDPRSHCSNITENEEEEGVEGPVGWPPVNYWRKKLRVNEVAGNDDHMVWVDHHHHGHGSVGDGGSNTLYVKVKMEGVGIARKVDLGMHQSFQMLKETLMDMFGKCHQQSNSYELAYEDKEGDWLLAEDVPWRQKFRSVCTKTQITEEQRINGNKIFNLQPVNFVSSALESQMTPFLAPPLPQPPPLSPPLSPPPLLLSPSPQSPSPPPPLLPPPPPSSLPQLPRLLALPPPSPLPQLPLIIAATTTTTTSITFITTSFITTTIVTVTTTITITTTNAAATTISNVTTTIDFATTITIGTATITASIATTTAVGTAITVTVSFTTTTTIIVVVTTTIVVTTQTYF 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0998 420 MobiDBLite consensus disorder prediction 53 98 - -
Ssu6g0998 420 Gene3D - 138 233 - -
Ssu6g0998 420 SUPERFAMILY CAD & PB1 domains 135 215 - -
Ssu6g0998 420 MobiDBLite consensus disorder prediction 252 303 - -
Ssu6g0998 420 ProSiteProfiles PB1 domain profile. 143 223 IPR000270 GO:0005515
Ssu6g0998 420 MobiDBLite consensus disorder prediction 251 303 - -
Ssu6g0998 420 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 222 IPR003311 GO:0005634|GO:0006355
Ssu6g0998 420 Pfam AUX/IAA family 33 182 IPR033389 -
Ssu6g0998 420 Pfam AUX/IAA family 185 220 IPR033389 -
Ssu6g0998 420 MobiDBLite consensus disorder prediction 70 89 - -
Ssu6g0998 420 PANTHER AUXIN-RESPONSIVE PROTEIN IAA20 1 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0998 Ssu-Chr6 16203169 16206367 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0998 147 209 B3 DNA Binding Superfamily AT3G61830 35.385 1.62e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ssu6g0998 AUX_IAA 5.2e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0998 K14484 - gmx:100808466 203.756
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0998 6 16203169 16206367 Ssu6g0998 6 16203169 16206367 ECH