Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0996 ATGAAAGTTGTGACCATGGAGACCGAGAAGAAGTGCGGTTGCTGGGCTGTCCTTAAACGCGGCGTTAGAGGTGCGTGCAAACCCTCAGCTTCCAGAGACTCTGCTAACACTATCCCTCGTACTAGTCTCGTTTATGATGCAGCAACCGAGACAAGATACCTGAATGCTAGCAATAGAGAGCTATGTCCTCCGAATGAAGCTCGATTATCTTCTGATAATCCTGATCCCCCACCTCAGGAGAATAAGGCTCCTTGCCAGCTCCTTCAATTTACATTTCAGGAACTAAAGGCTGCAACTGGGAATTTCAGACCTGATAGCATTCTTGGGGAGGGTGGATTTGGTTATGTTTTCAAAGGATGGATTGAGGAAGATGGAACGGCGCCGGCAAAACCTGGGTCGGGGATTACTGTGGCTGTCAAAAGCTTGAAGCCAGATGGTCTTCAGGGCCATAGAGAATGGGTGGCTGAAGTTGACTTTCTTGGACAGCTTCACCATCCTAACCTTGTGAAACTTATTGGTTACTGCATTGAAGATGATCAGCGGCTTCTTGTTTACGAGTTTATGACCCGAGGAAGTCTGGAAAATCATCTATTCAGAAGAACCGTACCTCTTCCATGGTCCAATAGGGTTAAGATTGCCCTTGGTGCAGCAAAAGGATTGGCCTTCCTCCATAATGGTCTAGAACCAGTCATTTATAGAGattttaaaacatcaaacaTTTTGCTTGATACGGAGTATAATGCGAAGCTTTCAGATTTTGGTCTAGCAAAAGCAGGGCCTCAAGGAGACAAAACACATGTTTCTACCAGAGTAGTTGGAACTTATGGTTATGCCGCTCCAGAATATGTCATGACAGGACATTTGACAGCTAAAAGTGATGTTTATAGCTTTGGAGTTGTGTTACTTGAGATATTAACAGGAAGAAGATCAATGGACAAGAAGCGCCCGAGTGGGGAACAAAATCTTGTTTCATGGGCTAGGCCATATTTAGCCGACAAGCGAAAACTGTTCCAACTCGTGGATCCTCGCCTCGAACTAAATTATTCTCTAAAAGGAGTGCAGAAAATTTCGCAGTTAGCTAATAGTTGTCTCAGTAGGGACCCCAAATCCCGTCCTAACATGGATGAGGTTGTGAAGGCTTTGACTCCATTGCAGGATCTTAATGACTTTGCAATTTTGTCTTATCACTCTCGCTTGTCTCAACAAGGgagacgaaagaagaaagatggaacTCCACATATCACGTACACTCAATCCAAGAGCATGAGGGCTTCTCCCTTGAATACTGGCAAGCAGCATCGATGA 1305 0.4375 MKVVTMETEKKCGCWAVLKRGVRGACKPSASRDSANTIPRTSLVYDAATETRYLNASNRELCPPNEARLSSDNPDPPPQENKAPCQLLQFTFQELKAATGNFRPDSILGEGGFGYVFKGWIEEDGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTVPLPWSNRVKIALGAAKGLAFLHNGLEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLADKRKLFQLVDPRLELNYSLKGVQKISQLANSCLSRDPKSRPNMDEVVKALTPLQDLNDFAILSYHSRLSQQGRRKKKDGTPHITYTQSKSMRASPLNTGKQHR 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0996 434 MobiDBLite consensus disorder prediction 62 83 - -
Ssu6g0996 434 ProSitePatterns Protein kinases ATP-binding region signature. 108 140 IPR017441 GO:0005524
Ssu6g0996 434 Gene3D Phosphorylase Kinase; domain 1 78 187 - -
Ssu6g0996 434 Pfam Protein tyrosine and serine/threonine kinase 106 381 IPR001245 GO:0004672|GO:0006468
Ssu6g0996 434 PANTHER OS01G0588500 PROTEIN 79 403 - -
Ssu6g0996 434 ProSiteProfiles Protein kinase domain profile. 102 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0996 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Ssu6g0996 434 PANTHER OS01G0588500 PROTEIN-RELATED 79 403 - -
Ssu6g0996 434 SUPERFAMILY Protein kinase-like (PK-like) 84 388 IPR011009 -
Ssu6g0996 434 Gene3D Transferase(Phosphotransferase) domain 1 188 398 - -
Ssu6g0996 434 MobiDBLite consensus disorder prediction 401 434 - -
Ssu6g0996 434 MobiDBLite consensus disorder prediction 414 434 - -
Ssu6g0996 434 CDD STKc_IRAK 108 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0996 Ssu-Chr6 16121105 16124682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0996 90 396 Glycoside Hydrolase AT3G07070 54.341 1.79e-110 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu6g0996 PK_Tyr_Ser-Thr 4.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0996 - - aprc:113848012 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0996 6 16121105 16124682 Ssu6g0996 6 16121105 16124682 ECH