Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0971 ATGGCTATCACTGCGTTATTCTTGGTGCTGTTGCTGCAATTGTCAACAATTTTTGGCGAGGTTGTCTTACAGTCAAAAGAATGTGGCACTGATTGGGTGGCACATTCATATTCTAGTCATGGTCAGGAACTGTTCTACATAAACGGCAATGTGGTGAACAAGGTTGCTTTCTGTGAGGCTCTCCAATTGTATATTGCGGAGGGCTGTGATGTAAAGGACTACTTTGGAAGTGTCAAATGTGTGATGGATGATGTCTCTTCTGTGAATTTACCTTTAAAGGCAGGGAGGAAACTTTTGCAGAAGGTTTTGAGCAGTGAATCCACATCACAAGGGGATTCAAAGTCTACGTCAAGCCGCGTAGTTGGTTTTTATGCAGGTGGAGCTTTATTGGCATGTTGTGTTGTTCTTTGTCCTTGTTTCTTTCGCAAGAGACGGAAAGCAACTTCTCATGCTGTTCTGACCAAGGACCCAAATTCAATGGATTCAGTTTCCTCCTTCGAAGCCTCCGTTACTGATAAGATTCCAGCCAGTCCACTTCGGGTGCCACCTAGTCCGTCACGATTCTCAATGTCTCCAAAACTCAGTAGACTTCAATCATTGCATCTCAATCTGAACCAGGTTACAAGAGCTACCCATAACTTCTCAGAAACATTACAAATAGGGGAAGGAGGTTTTGGGACTGTCTACAAGGCCAAGTTGGAAGATGGCCTGGTTGTGGCTGTAAAACGTGCAAAAAAGGAACATTTTGATAGTTTGAGAACAGAATTCAGCAGTGAAATTGAACTTTTGGCCAAAATTGATCATCGAAACCTGGTGAAGCTACTAGGTTATATTGATAAAGGAAACGAACGTCTTCTTATTACAGAGTATGTGCCAAATGGTACCCTTAGAGAACATTTGGATGGTCAGCGTGGAAAAATCCTAGACTTCAATCAGCGCCTTGAAATTGCAATTGATGTTGCTCATGGCTTGACCTATCTGCATCTGTATGCAGAAAAGCAAATTATCCATCGAGATGTGAAATCATCCAACATTCTTCTGACAGAAAGCATGCGAGCTAAAGTTGCTGATTTTGGATTTGCAAGGCTTGGTCCAGTAAACACTGATCAGACACACATTTCTACCAAAGTGAAGGGAACAGTTGGTTATTTGGATCCTGAGTATATGAAAACATACCAACTCACTCCCAAGAGTGACGTTTACTCGTTTGGAATTTTGCTTTTAGAAATTGTGACTGGCCGCCGTCCTGTTGAGTTGAAGAAAACTGTTGAAGAGCGGGTTACACTCAGATGGGCCTTCAGGAAGTATAATGAAGGAAGTGTGGTGGAACTGGTAGATCCTATGATGGAAGAAGCTGTAAACGCAGATGTTCTCATGAAGATGTTTGATTTGGCATTTCAATGTGCAGCCCCCATTCGAGCGGATAGACCTGACATGAAATCGGTGGGGGAGCAATTGTGGGCAATAAGGGCAGATTACCTCAAGAGTGCAAGGAGAGAATAA 1503 0.4285 MAITALFLVLLLQLSTIFGEVVLQSKECGTDWVAHSYSSHGQELFYINGNVVNKVAFCEALQLYIAEGCDVKDYFGSVKCVMDDVSSVNLPLKAGRKLLQKVLSSESTSQGDSKSTSSRVVGFYAGGALLACCVVLCPCFFRKRRKATSHAVLTKDPNSMDSVSSFEASVTDKIPASPLRVPPSPSRFSMSPKLSRLQSLHLNLNQVTRATHNFSETLQIGEGGFGTVYKAKLEDGLVVAVKRAKKEHFDSLRTEFSSEIELLAKIDHRNLVKLLGYIDKGNERLLITEYVPNGTLREHLDGQRGKILDFNQRLEIAIDVAHGLTYLHLYAEKQIIHRDVKSSNILLTESMRAKVADFGFARLGPVNTDQTHISTKVKGTVGYLDPEYMKTYQLTPKSDVYSFGILLLEIVTGRRPVELKKTVEERVTLRWAFRKYNEGSVVELVDPMMEEAVNADVLMKMFDLAFQCAAPIRADRPDMKSVGEQLWAIRADYLKSARRE 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0971 500 Gene3D Phosphorylase Kinase; domain 1 185 290 - -
Ssu6g0971 500 SUPERFAMILY Protein kinase-like (PK-like) 195 489 IPR011009 -
Ssu6g0971 500 ProSitePatterns Protein kinases ATP-binding region signature. 220 246 IPR017441 GO:0005524
Ssu6g0971 500 Gene3D Transferase(Phosphotransferase) domain 1 291 499 - -
Ssu6g0971 500 PANTHER NODULATION RECEPTOR KINASE-LIKE PROTEIN 20 499 - -
Ssu6g0971 500 SMART serkin_6 214 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0971 500 Pfam Protein tyrosine and serine/threonine kinase 219 486 IPR001245 GO:0004672|GO:0006468
Ssu6g0971 500 CDD STKc_IRAK 220 486 - -
Ssu6g0971 500 PANTHER OS07G0166700 PROTEIN 20 499 IPR045272 GO:0004714|GO:0006468
Ssu6g0971 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 335 347 IPR008271 GO:0004672|GO:0006468
Ssu6g0971 500 ProSiteProfiles Protein kinase domain profile. 214 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0971 Ssu-Chr6 15608352 15612388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0971 199 489 Receptor kinase-like Gene Family AT5G59700 46.392 8.12e-76 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Ssu6g0971 PK_Tyr_Ser-Thr 3.7e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0971 - - gmx:100798260 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0971 6 15608352 15612388 Ssu6g0971 6 15608352 15612388 ECH