Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0970 ATGACCCGGTTCTCGGGTTGCGCTCTTTTCGTGTGCAGGGTTTACGAGAACGAGTTCTTCAAGCAGGATTGGAGGAGCAAAGGGAAGGCGCAGATATTTCAGTTCATTTTTATGAAGTGGCTCTTGTGCTTTCTCATTGGCATGATCGTTTGCCTCGTCGGGTTTTGCAACAATCTCGCGGTGGAGAATCTCGCTGGCATCAAGTTTGTGGTCACGTCTAACATGATGCTGGAGAGGAGGTTTCTGTTGgcctttttaatattttttgtttcaaatttggTTCTCACGCTTTTTGCGTCCACAATCACGGCTTTGATAGCACCTACTGCCACCGGTTCTGGTATACCCGAGGTGAAGGCTTACCTGAATGGTGTGGATGCACCTGGAATATTCACTATACGAACTCTCATTGTTAAGATTATTGGAAGCATTACAGCAGTGTCATCATCGCTTCTTATTGGGAAAGCAGGGCCTATGGTGCATACAGGAGCATGTGTGGCAGCATTGTTAGGTCAGGGTGGGTCGAAGAGATATGGGTTAACATGGAAATGGTTACGATTTTTTAAGAATGACCGAGATCGGAGGGATCTAATAATATGTGGATCAGCAGCTGGAATTGCTGCCGCCTTCCGTGCCCCTGTTGGTGGTGTGTTGTTTGCTCTTGAAGGGATGGCATCTTGGTGGGGAAGTGCCCTTCTGTGGAGAGTTTTCTTCACAGCAGCAATAGTTGCAATTTTGCTTCGTGCCAtgattgatttatgtttaagtgGTAAATGTGGGTTATTTGGTAAAGGGGGACTGATAATGTTTGATGCTTATTCAGCAAGTGTTTCATATCATTTGGTGGATGTTCCTCCTGTGTTTATTCTTGGTGTTATAGGGGGGATACTTGGCAGCTTGTTTAATCTGATGTTGAGCAAAGTTCTTCGCATATACAATTTTATCAACGAGAAAGGCTccgtttttaaaattttgcttgcCTGTGTAATCTCCATTTTTACATCCTGTCTTCTTTTTGGATTGCCATGGTTGGCATCTTGCCGACCTTGTCCACCTCATCCAACTGAGCCTTGCCCTACAATAGGTCGGTCTGGTATCTACAAGAAATTCCAGTGCCCTCCTCATCACTACAATGATCTTGCCAGCCTCATTTTCAACACAAATGATGATGCTATCAAAAATCTATTTAGCAAGAACACCGACGATGAGTTTGAGTTTATATCAGTGTTCATCTTTTTCatcatttgcttttttttaagtATCTTTAGCTATGGAATTGTTGCTCCAGCTGGTCTTTTTGTGCCAGTTATTGTGACTGGTGCGTGTTATGGGCGCATTGTTGGAATGCTGCTTGGCAAGAAGTCCAGTCTTAACCATGGTCTTTATGCTGTACTTGGTGCTGCTTCCTTTCTTGGTGGATCCATGAGGACAGCAGTTTCTCTGTGTGTAATTATTCTGGAACTGACCAATAACCTGTTATTGTTACCCCTAATCATGATGGTTCTGTTCATATCTAAGACTGTAGCAGATGCTTTCAGTGcaaatatatatgacattataATGAAAGCCAAGGGTTTGCCTTATTTAGGAACTCGTGCTGAACCATATACAAGGCAGCTAACTGTAGGCGATATAGTTACAGGCCCACTTCAGACATTTAATGGCATTGAGAAGGTTCGTAACATAGTGTTTATTCTCAAAACTACTGGACATAACGGATTTCCTGTTATTGATGAGCCTCCAATTTCGGAAGCTCCAGTTTTATTTGGCATAATCCTTCGTGACCATCTTCTCACGTTGTTGGAGAAGAAAGCTTTTTTGTCCTCACCTATGGCAACAAGTAATGAAGTCTTCAACAAGTTTTCAGCTGATGATTTTGCAAAGAAGGGTTCAAGCAAAGTTCCGCTGAAGATAGAGGATATACGGTTATCGGACGAAGAGATGGACATGTTCATAGATCTACATCCATATACTAATGCTTCTCCTTATACTGTTGTGGAGACAATGTCACTGGGAAAGGCCCTTACACTTTTTCGAGAGCTTGGTTTAAGGCATCTGCTAGTGGTACCCAAGATCACCAGTAGATCACCTGTGGTGGGTATACTAACACGGCACGATTTCATGCCAGAACATATATCGAGTTTGCATCCTTTTCTGGCAAGAAACAAGGAGAAAAGGTTAAGATTTTAG 2190 0.4132 MTRFSGCALFVCRVYENEFFKQDWRSKGKAQIFQFIFMKWLLCFLIGMIVCLVGFCNNLAVENLAGIKFVVTSNMMLERRFLLAFLIFFVSNLVLTLFASTITALIAPTATGSGIPEVKAYLNGVDAPGIFTIRTLIVKIIGSITAVSSSLLIGKAGPMVHTGACVAALLGQGGSKRYGLTWKWLRFFKNDRDRRDLIICGSAAGIAAAFRAPVGGVLFALEGMASWWGSALLWRVFFTAAIVAILLRAMIDLCLSGKCGLFGKGGLIMFDAYSASVSYHLVDVPPVFILGVIGGILGSLFNLMLSKVLRIYNFINEKGSVFKILLACVISIFTSCLLFGLPWLASCRPCPPHPTEPCPTIGRSGIYKKFQCPPHHYNDLASLIFNTNDDAIKNLFSKNTDDEFEFISVFIFFIICFFLSIFSYGIVAPAGLFVPVIVTGACYGRIVGMLLGKKSSLNHGLYAVLGAASFLGGSMRTAVSLCVIILELTNNLLLLPLIMMVLFISKTVADAFSANIYDIIMKAKGLPYLGTRAEPYTRQLTVGDIVTGPLQTFNGIEKVRNIVFILKTTGHNGFPVIDEPPISEAPVLFGIILRDHLLTLLEKKAFLSSPMATSNEVFNKFSADDFAKKGSSKVPLKIEDIRLSDEEMDMFIDLHPYTNASPYTVVETMSLGKALTLFRELGLRHLLVVPKITSRSPVVGILTRHDFMPEHISSLHPFLARNKEKRLRF 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0970 729 Pfam CBS domain 661 707 IPR000644 -
Ssu6g0970 729 Gene3D Clc chloride channel 31 530 - -
Ssu6g0970 729 CDD CBS_pair_voltage-gated_CLC_euk_bac 541 710 - -
Ssu6g0970 729 ProSiteProfiles CBS domain profile. 657 718 IPR000644 -
Ssu6g0970 729 PANTHER CHLORIDE CHANNEL PROTEIN 14 727 - -
Ssu6g0970 729 SMART cbs_1 661 716 IPR000644 -
Ssu6g0970 729 SMART cbs_1 549 602 IPR000644 -
Ssu6g0970 729 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 14 727 - -
Ssu6g0970 729 Gene3D - 531 710 IPR046342 -
Ssu6g0970 729 PRINTS Chloride channel signature 108 125 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu6g0970 729 PRINTS Chloride channel signature 139 158 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu6g0970 729 PRINTS Chloride channel signature 428 448 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu6g0970 729 PRINTS Chloride channel signature 478 497 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu6g0970 729 PRINTS Chloride channel signature 460 476 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu6g0970 729 PRINTS Chloride channel signature 203 222 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu6g0970 729 PRINTS Chloride channel signature 516 530 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Ssu6g0970 729 SUPERFAMILY Clc chloride channel 17 530 IPR014743 -
Ssu6g0970 729 PRINTS Plant CLC chloride channel signature 380 396 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ssu6g0970 729 PRINTS Plant CLC chloride channel signature 224 232 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ssu6g0970 729 PRINTS Plant CLC chloride channel signature 13 21 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ssu6g0970 729 PRINTS Plant CLC chloride channel signature 238 248 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ssu6g0970 729 PRINTS Plant CLC chloride channel signature 256 263 IPR002251 GO:0005247|GO:0006821|GO:0016020
Ssu6g0970 729 SUPERFAMILY CBS-domain pair 534 708 IPR046342 -
Ssu6g0970 729 Pfam Voltage gated chloride channel 96 510 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0970 Ssu-Chr6 15601641 15606724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0970 13 728 Ion Channels AT5G33280 74.022 0.0 1071
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0970 K05016 - gmx:100817901 1219.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0970 6 15601641 15606724 Ssu6g0970 6 15601641 15606724 ECH