Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0945 ATGgggaagaaaaagaagcaaGGAGAAATTAGGGAGGATAGTAAAGTGGGAGATAGCAGCCCCGGAGCATATGACAATGATACTATGGTGTTTATATCCATGTCTCAAGAATTGAAGAATGAGGGGAACAAGCTGTTCCAAAAGAGGGATGTTGAAGGGGCTATACTAAAATATGAGAAAGCCCTCAAGTTGCTTCCGAAAAACCATATTGATGTGTCCTATCTGCGGAGCAACATGGCTGCGTGTTACATGCAGATGGGACTCGGTGAATTCCCAAGGGCTATTCATGAATGTGATTTGGCTCTTGAGGTAACACCGAAATATAGTAAAGCTCTGTTGAAGAGGGCAAGGTGCTATGAGGCTTTAAATAGGCTGGATTTAGCTTTGAGAGATGTCAGCACTGTTGTGAAGATGGAGCCAACTAATGTCATGGCATTGGAGATCtcagaaaaggtgaaaaatgCACTTGAGGAGAAAGGATTGAGAGTAAACGATGCAATAATTGAGTTGCCCCCAGATTATGTTGAACCTCCTAATGCTTTGCCTCCAGAAAAGGTATTGAAAGAGAAGACACGCAAGAAGAAGGCCaataaagaggaagagaaggctcCTGATGACAAAACTCCAGAAAAGCAAACTGAGGGTGGTATTGTAGTGGTGGAGAAGAAGATCAACAAGTCCAAGAAGAAGAAGGCTGATATTAAGGAAGTTATAGAGGAAAGAAGTAATGGTAGAAGGGAAGGTGTTCCTAAGAAAACAGCTAAACTTATTTTTGGTGATGATATAAGATGTACTGAACTGCCTATTAATTGTAGCCTCTTCCAGTTAAGTGAAGTTATTCATGACCGATTCCCTAGCCTAGGAGCTATTCTTGTCAAATACAGGGACCAAGAAGGTGATTTGGTCACAATCACTTCTGATGATGAATTAAGATGGGCAGAAACAGGATCTCATGGTTCTATCCGGCTGTACATAGTAGAAGCTACTCCTGAGCAGGATCCACTTTTTGAGAAACTTAAAGTAAAGGAGGGGCATATGGTTGGCATTAACGGTGCACCTGAGAATGGTTGTGTGGGAAAAGCAAAGGAAATTGTTAGCTCTTCTTGCATTGAGGATTGGATAATTCGGTTTGCCAAACTGTTCAAGAACCATGTTGGGTTTGAATCTGACGGATGTTTGGATTTTCATGAACTTGGGATGAAGCTCTATTCTGAGGCTTTGGAGGAGACGGTTACAAGCGAAGAAGCACATGGTCTGTTTGACATGGCAGGAGATAAGTTCCAAGAGATGACTGCTCTTGCATTGTTCAACTGGGGAAATGTGCATATGTCCAGGGCAAGGAAGAAAGTATATTTCACAGAAGATTCTTCTAAAGAGCATCTATGTGAACAAATCAAAAGTTCATATGCATGGGCACTGGAAGAATACGCAAAAGCAGGAGAAAAATATGAAGCTGCCATTAAAATTAAGTCAGATTTTCATGAAGGCTTCCTGGCTCTAGGGCTGCAGCAGTTTGAGCAAGCTAAACTTTCTTGGTATCATGCACTCAGTAGGAATGTAGATTTACTGACATGGCCTTCCACTGAGGTTCTTCAGATTTACAACAACGCTGAGGAAAATATGGAGAAAGGAATGCAGATGTGGGAAGAATCAGAAAAGCAGAACTTGAGTAAAACATCTAATTCAAATGATGTTAGTTTACATCTACAGAACATGGGGTTGGATgggctttttaaaaatatatcctcAGATGAACTTGCAGAACAGGAGGCACACATGAGGTCTCAAATAAATCTCCTATGGGGTACCATGCTATATGAACGCTCAATTGTTGAATTCAAATTAGGGCTACCGATATGGCATGAATCTCTAGAAGTTGCAGTCGAGAAGTTTGAACTTGCTGGACCTTCTCCAACAGACATAGCTGTAATTTTGAAGAACCACTGTTCAAATAATACTGCAGTAGATGGTCTTGCCTTCAAAATTGATGAAATAGTACAGGCATGGAATGAGATGTACAAAGCTAAAAAGTGGCAGAGTGGAGTTCCATCATTTCGTTTGGAACCCTTATTTAGAAGGcgagtttcaaaaatttatcatgCCTTTGAGCTTGCATGA 2118 0.3933 MGKKKKQGEIREDSKVGDSSPGAYDNDTMVFISMSQELKNEGNKLFQKRDVEGAILKYEKALKLLPKNHIDVSYLRSNMAACYMQMGLGEFPRAIHECDLALEVTPKYSKALLKRARCYEALNRLDLALRDVSTVVKMEPTNVMALEISEKVKNALEEKGLRVNDAIIELPPDYVEPPNALPPEKVLKEKTRKKKANKEEEKAPDDKTPEKQTEGGIVVVEKKINKSKKKKADIKEVIEERSNGRREGVPKKTAKLIFGDDIRCTELPINCSLFQLSEVIHDRFPSLGAILVKYRDQEGDLVTITSDDELRWAETGSHGSIRLYIVEATPEQDPLFEKLKVKEGHMVGINGAPENGCVGKAKEIVSSSCIEDWIIRFAKLFKNHVGFESDGCLDFHELGMKLYSEALEETVTSEEAHGLFDMAGDKFQEMTALALFNWGNVHMSRARKKVYFTEDSSKEHLCEQIKSSYAWALEEYAKAGEKYEAAIKIKSDFHEGFLALGLQQFEQAKLSWYHALSRNVDLLTWPSTEVLQIYNNAEENMEKGMQMWEESEKQNLSKTSNSNDVSLHLQNMGLDGLFKNISSDELAEQEAHMRSQINLLWGTMLYERSIVEFKLGLPIWHESLEVAVEKFELAGPSPTDIAVILKNHCSNNTAVDGLAFKIDEIVQAWNEMYKAKKWQSGVPSFRLEPLFRRRVSKIYHAFELA 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0945 705 SUPERFAMILY TPR-like 36 518 IPR011990 GO:0005515
Ssu6g0945 705 SMART tpr_5 73 108 IPR019734 GO:0005515
Ssu6g0945 705 SMART tpr_5 35 68 IPR019734 GO:0005515
Ssu6g0945 705 SMART tpr_5 109 142 IPR019734 GO:0005515
Ssu6g0945 705 ProSiteProfiles TPR repeat profile. 109 142 IPR019734 GO:0005515
Ssu6g0945 705 SUPERFAMILY CAD & PB1 domains 254 337 - -
Ssu6g0945 705 MobiDBLite consensus disorder prediction 183 212 - -
Ssu6g0945 705 CDD PB1 255 325 - -
Ssu6g0945 705 MobiDBLite consensus disorder prediction 1 18 - -
Ssu6g0945 705 SMART PB1_new 251 328 IPR000270 GO:0005515
Ssu6g0945 705 PANTHER PROTEIN CLMP1 5 704 IPR044517 -
Ssu6g0945 705 MobiDBLite consensus disorder prediction 173 213 - -
Ssu6g0945 705 Gene3D - 252 331 - -
Ssu6g0945 705 ProSiteProfiles TPR repeat profile. 35 68 IPR019734 GO:0005515
Ssu6g0945 705 PANTHER PROTEIN PHOX3 5 704 - -
Ssu6g0945 705 Pfam PB1 domain 253 326 IPR000270 GO:0005515
Ssu6g0945 705 MobiDBLite consensus disorder prediction 1 22 - -
Ssu6g0945 705 Gene3D Tetratricopeptide repeat domain 33 181 IPR011990 GO:0005515
Ssu6g0945 705 ProSiteProfiles PB1 domain profile. 251 328 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0945 Ssu-Chr6 15245656 15247855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0945 23 142 Calmodulin-binding Proteins AT3G25230 29.851 2.48e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0945 - - gmx:100807387 1197.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0945 6 15245656 15247855 Ssu6g0945 6 15245656 15247855 ECH
Ssu6g0945 6 15245656 15247855 Ssu1g1762 1 43793605 43793874 PCT