Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0932 ATGGGAAGTAATGGTATTGAAAAGATCCCAAACAATAACACCGCTGGAAGTTCAGAAACCACCATTgagataaagattaaaacattagATTCTCAAACTTACACCCTCAGAGTGGATAAACAGATGCCAGTCCCTGCTCTGAAAGAACAGATTGCTTCTGTAACTGGAGTGTTATGTGAACGACAACGCTTAATTTGCCAAGGAAAAGTTCTAAAGGATGATCAGCTCCTCTCTGCCTATCATGTTGAAGATGGTCACACCTTGCATCTGGTTGTGAGGCAACCTGATCTACCACCACCAGGAAGTGTGCCCAATCATTCAGTGACTGAACCAAATTCAAGCACAAGCCATGGTCACAGTAGTCAAGTAGCCCCTGGtgtttttattgaaactttCAATGTGCCTGTTCAGGGTGATGGAGTTGCTCCTGAAATCAATAGGATTGTTTCTGCTGTTCTAGGATCCATTGGACTTCCAAATTTTGCAAGTGGCAGTGAAGGGATTGATGTCAGGGAGCATGATTCCCAAGGCTCTGAAAGAACATCGGGTTCTAGTGGAATATTATATTCATCTCATCCTCAAACCGAACAAGCTGGTTTGCGGATTTTGTCTGATAGATCGCGTAATACCTTTGGACCTCCAGCACCAATATCTCTAGGGTCTTTGCAGCCTCCTGTCATTCCTGATTCTTTGACAACTTTGACCCAATACTTAAGTCATATAAGCCATGAATTTGATGCAATTGTCAGAGAAGGGGGGGATAATGCCCAAGCAGAGGCTCGAAGGAATGAAGAAATAGGATCCGTTTCTTTACGTTCGGGTTCAACTTCAGAAGGGCTTTCATCACCCACATCCTTGGCAGAAGTTTTACTTTCTACCAGACAAATGATTAATGAACAAGCTGGCGAGTGCCTACTTCAACTATCAAGGCAGCTGGAGAATCAAGCAGATGTAGCTGATCCCTTGTTGCGATCAAGCATTCAGTCTAGGGCTTTGAGAACTGGAGTTTTGTTTTATAACCTTGGTGCATTTTTACTTGAGCTTGGTCGCACAACCATGACACTGCGTTTGGGTCAAACACCGTCTGAAGCTGTAGTTAATGGTGGGCCTGCAGTTTTTATATCCCCAAATGGTCCTAACCATATCATGGTTCAGCCCCTTCCTTTTCAACCTGGAGCAAGCTTTGGTGCTGTCCCTGTGGGAGCTGCACAGTCCAACTCAAGTTTAGGTAGTGGACTTGGCTCAAGCTTTTTCCCAAGGCGTATAGATATACAGATACGGCGAgGTACCTCAACAACCTCATCCAATACCAATCAAGAAGAACGCAATGATACACAATCTGCTTCAGTACAAAGAAATCCAGGGGAAAGTTCTGTTAATCAGGGTACCTCTAGGCATCCAGATGCATCTATTGCTGGGGAGCCAGGTGTAAGGTTAGTGCCAATTAGAACCATGGTTGCAGCAGTACCAGGCCCCTTAGGGCGTCCGCCTTCAGAATCATCTGGGAATTCTATAGGACTTTACTATCCAATTCTTGGAGATTTCAACATGTATCTTCCGGGCATGCAAATAGTGAACAGGGATCTCAACAATCAAGTCAGCATCATGCTGTGGTACCATCAGCTACTGAATCCATGTTGCAAAGGCAAAACACAGAAGATTCTGCAAGGAATGGATCCTTGTCAACTCCAAGCACAAGACAAGACCCATCAAATTCTCGTGTTGTAA 1728 0.4375 MGSNGIEKIPNNNTAGSSETTIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLCERQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRQPDLPPPGSVPNHSVTEPNSSTSHGHSSQVAPGVFIETFNVPVQGDGVAPEINRIVSAVLGSIGLPNFASGSEGIDVREHDSQGSERTSGSSGILYSSHPQTEQAGLRILSDRSRNTFGPPAPISLGSLQPPVIPDSLTTLTQYLSHISHEFDAIVREGGDNAQAEARRNEEIGSVSLRSGSTSEGLSSPTSLAEVLLSTRQMINEQAGECLLQLSRQLENQADVADPLLRSSIQSRALRTGVLFYNLGAFLLELGRTTMTLRLGQTPSEAVVNGGPAVFISPNGPNHIMVQPLPFQPGASFGAVPVGAAQSNSSLGSGLGSSFFPRRIDIQIRRGTSTTSSNTNQEERNDTQSASVQRNPGESSVNQGTSRHPDASIAGEPGVRLVPIRTMVAAVPGPLGRPPSESSGNSIGLYYPILGDFNMYLPGMQIVNRDLNNQVSIMLWYHQLLNPCCKGKTQKILQGMDPCQLQAQDKTHQILVL 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0932 575 SMART ubq_7 22 93 IPR000626 GO:0005515
Ssu6g0932 575 SUPERFAMILY Ubiquitin-like 17 102 IPR029071 -
Ssu6g0932 575 MobiDBLite consensus disorder prediction 106 121 - -
Ssu6g0932 575 PRINTS Ubiquitin signature 32 52 IPR019956 -
Ssu6g0932 575 PRINTS Ubiquitin signature 53 73 IPR019956 -
Ssu6g0932 575 PRINTS Ubiquitin signature 74 95 IPR019956 -
Ssu6g0932 575 Pfam Ubiquitin family 24 94 IPR000626 GO:0005515
Ssu6g0932 575 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
Ssu6g0932 575 MobiDBLite consensus disorder prediction 179 195 - -
Ssu6g0932 575 MobiDBLite consensus disorder prediction 427 467 - -
Ssu6g0932 575 MobiDBLite consensus disorder prediction 268 282 - -
Ssu6g0932 575 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 1 523 - -
Ssu6g0932 575 MobiDBLite consensus disorder prediction 427 475 - -
Ssu6g0932 575 MobiDBLite consensus disorder prediction 256 282 - -
Ssu6g0932 575 MobiDBLite consensus disorder prediction 93 121 - -
Ssu6g0932 575 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 1 523 - -
Ssu6g0932 575 MobiDBLite consensus disorder prediction 166 195 - -
Ssu6g0932 575 Gene3D - 15 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0932 Ssu-Chr6 15019576 15025174 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0932 22 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 1.14e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0932 K23390 - gmx:100783070 851.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0932 6 15019576 15025174 Ssu6g0932 6 15019576 15025174 ECH