Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0930 ATGTGTGTGCCAGACGGTGAACAAGTGGGTGAAGATAAGGAGAAGAACGTTGATAACAGAAGTATGTCATGGCCTTTGCATTGTGGTCTCTTGCATGCCCAGATGGATAACCGGGAAAAAGACTCTTCTTTTAGAACTCCCTCTGACCAGATCAGTGTTGCAAATTCATTTCCTCTGGAAAGCATTTGTGAGGATACAGAAATTGTGGACAAAAAACAGAACCAGATGAACTTTGTCCCTACTCTTCGGTCTGGAGAGTGGTCTGATATTGGAGATCGCCCTTCCATGGAAGATACCCACATATGCATTGGAGATTTGGCAGAAGAATTTGGCAATAACGTACGTTGCGAGGAAGCTATTTCCTTTTATGGTGTATTTGATGGACATGGAGGGAAGAGTGCTGCACAATTTGTTCGAGATCATCTGCCACAGGTGATTGTTGAGGATGCTGGCTTTCCTATAGAACTTGAGAAGGTTGTCACAAGGTCATTTTTGGAGACTGATGCACAGTTTGCAAAATCGTGTTCTAAAGAGTCTTCCCTGTCTTCTGGCACAACTGCACTGACTGCAATTATATTTGGAAGGTGA 588 0.4354 MCVPDGEQVGEDKEKNVDNRSMSWPLHCGLLHAQMDNREKDSSFRTPSDQISVANSFPLESICEDTEIVDKKQNQMNFVPTLRSGEWSDIGDRPSMEDTHICIGDLAEEFGNNVRCEEAISFYGVFDGHGGKSAAQFVRDHLPQVIVEDAGFPIELEKVVTRSFLETDAQFAKSCSKESSLSSGTTALTAIIFGR 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0930 195 Gene3D - 62 195 IPR036457 -
Ssu6g0930 195 CDD PP2Cc 83 195 IPR001932 -
Ssu6g0930 195 PANTHER PROTEIN PHOSPHATASE 2C 1 195 IPR015655 GO:0004722|GO:0006470
Ssu6g0930 195 ProSitePatterns PPM-type phosphatase domain signature. 122 130 IPR000222 GO:0043169
Ssu6g0930 195 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 195 - -
Ssu6g0930 195 Pfam Protein phosphatase 2C 93 194 IPR001932 -
Ssu6g0930 195 SUPERFAMILY PP2C-like 74 194 IPR036457 -
Ssu6g0930 195 ProSiteProfiles PPM-type phosphatase domain profile. 83 195 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0930 Ssu-Chr6 14991851 14993969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0930 42 195 PP2C-type Phosphatase Gene Family AT2G25620 47.403 2.36e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Ssu6g0930 PP2C 1.1e-14 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0930 K14803 - gmx:100782648 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0930 6 14991851 14993969 Ssu6g0930 6 14991851 14993969 ECH