Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0929 ATGTCCAAAGATCATAGGCCATTGTGCATTAAAGAAAGGACGAGGATTGAGTCCCTAGGCGGATACATAGATGATGGTTACCTGAATGGCCAGTTAGGTGTCACTCGCGCACTAGGCGACTGGCATCTTGAAGGAATGAAGGAAATGAATGGAAAGGGTGGACCATTGAGTGCTGAGCCTGAACTTAAAATGATGACattgaccaaagaagatgaattcTTGATAATTGGCAGTGATGGAATCTGGGATGTTTTCCGCAGCCAAAATGCTGTAGACTTTACTCGAAGGAGGCTTCAAGAGCACAATGATGTGAAGCAGTGTTGCAAGGAGATAATAGGGGAAGCAATAAAGAGAGGAGCAACAGACAACTTGACAGTGGTGATGATATGTTTTCACTCAGAACCACCACCTCCTATGGTTGTAGAAAGGCCTAGAGTCAGAAGAAGCATATCTGCTGAGggacttcaaaatattaaatgcttGCTAGAAGGATAG 495 0.4101 MSKDHRPLCIKERTRIESLGGYIDDGYLNGQLGVTRALGDWHLEGMKEMNGKGGPLSAEPELKMMTLTKEDEFLIIGSDGIWDVFRSQNAVDFTRRRLQEHNDVKQCCKEIIGEAIKRGATDNLTVVMICFHSEPPPPMVVERPRVRRSISAEGLQNIKCLLEG 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0929 164 Pfam Protein phosphatase 2C 1 123 IPR001932 -
Ssu6g0929 164 CDD PP2Cc 1 131 IPR001932 -
Ssu6g0929 164 SUPERFAMILY PP2C-like 1 133 IPR036457 -
Ssu6g0929 164 ProSiteProfiles PPM-type phosphatase domain profile. 1 131 IPR001932 -
Ssu6g0929 164 Gene3D - 1 143 IPR036457 -
Ssu6g0929 164 PANTHER PROTEIN PHOSPHATASE 2C 1 152 IPR015655 GO:0004722|GO:0006470
Ssu6g0929 164 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 152 - -
Ssu6g0929 164 SMART PP2C_4 1 129 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0929 Ssu-Chr6 14991022 14991516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0929 1 164 PP2C-type Phosphatase Gene Family AT2G25620 60.241 4.21e-69 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0929 K14803 - gmx:100782648 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0929 6 14991022 14991516 Ssu1g1780 1 44397160 44397587 PCT