Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu6g0925 | ATGGGTTCGGCCTCTAGTCTACTTGGGTCTCGCCCCTCTAGTCCCAGGGTCAACCGTTTCAGACTATCGTCTCTTCTATGTGGCACCTCCACCTCTCGCTCCATTCATCAGATGGAAGAACATTCATCTGAACTTCAGGTTGATTCAGCGAGAGATTTTGATGGTGAAATTCAGAAAGTCACTGAGGAATCATCTTTATCATATACAGAAGCTAGAATCAGCTGCAGTCCCCATGCTGAATCTGCAACCTCATCTGATAGGAGAACTGATTTCTCTGGGAATACTAGTGTTGAATGTTCTTCTAGAAACGTTGCAACAAATAGTCAGAGGAACTGCTTGTCTGAACATGAGGAGCTAGCCCCTCTTTATCAGGTAAGTGCTGGTCATAGTGGTCATGAATCATATAGTGATAGTAGCAACGCTGCTAGTACTTCATTTGTAGAACAGCAGTCTTCAGCTCCAGTCTCTGTAAATGTTTCTGCTAACAAGGATGTAGTCAATGATGTTAATGATCCAGTGGATAGTGGTGTCTCTCAAGTCTCTCATGAAATGCGTCCAAGAGGTTCAACCCCTCAAGAGCATGGGAATTTCGGTTCTGGTGAAATTTCTCTTGAGAATCACACTAGTGCATTCATATCTGTCCAGAATTCTTCCCACCCTGTTGCTCAAGTTTCCAACTTAGCAGCAACTCCTCAAGTGCCAGAAGATGAACCTCGTCGCGAGACAATTCCTTCAGGTTTAGGTATTCTTGTGTCCAATCGGGAAAGAGGGCCAGGAAATGATAGTGTGCTTCAAGTTGATGTGGTCGCAATATCTTCCAATGTTTTGTCTGGAAGCAATGCTGATGCCAATGATCATGATGCCAGAAGGAATGGTAGAAGATTATTTTGGGATGCTTTTTCACAACGCAGTTCTAGAAGGCTTGGTGATTCTCCAACCATTGTCTTCTCTGCTGGAGGTGCTGATGATCCTGGATCTCATGATCGATGGCTAGTTGATTTTAGTGGGGATTTGTCAAATGATGGGGTTGGAGGTGCTACTGGGTATATGGGCAGTAGAATTCACAGATTGAATGAACGAAGAATGCGGCACTCAAGATCTGAGaTCTGGGAAAGGCTTCGTGGAGGCTTTGATGAGATTGGTCGGTGGAATTCATGTCCATTAGGACTCCATGCAGATGGCATGTGCTCATGTGAGTCTTCCCCAATGGCTGAGGAATCTAGTACTCGAGCAAGTATTTCAAGAATAGTCATGCTGGCTGAGGCTTTGTTTGAGGTTTTAGACGAAATCCATCGACAACCTGGATCGCTGTCTCTATCCATGGTCTCACTGCCTGCACCTGAATCAATTGTTGATTCCTTCCCTCTGAAATCTCACAAAAAGGTTGATGTGGCTGATGGAGGCAATGATTCTGAACAATGTTACATATGTCTGGCGGAGTATGAAGAAGGGGACCAAATACGAGTTCTTCCTTGCTTCCACGAGTATCACATGTCATGTGTCGATAAGTGGCTTAAAGAAATACATGGTGTATGTCCTCTGTGTCGTGGCAATGTCTGTGGAGGGTTCACAGAGTCTTCTGCCCACTCAGAAATGCAGTCTCATTGA | 1608 | 0.4478 | MGSASSLLGSRPSSPRVNRFRLSSLLCGTSTSRSIHQMEEHSSELQVDSARDFDGEIQKVTEESSLSYTEARISCSPHAESATSSDRRTDFSGNTSVECSSRNVATNSQRNCLSEHEELAPLYQVSAGHSGHESYSDSSNAASTSFVEQQSSAPVSVNVSANKDVVNDVNDPVDSGVSQVSHEMRPRGSTPQEHGNFGSGEISLENHTSAFISVQNSSHPVAQVSNLAATPQVPEDEPRRETIPSGLGILVSNRERGPGNDSVLQVDVVAISSNVLSGSNADANDHDARRNGRRLFWDAFSQRSSRRLGDSPTIVFSAGGADDPGSHDRWLVDFSGDLSNDGVGGATGYMGSRIHRLNERRMRHSRSEIWERLRGGFDEIGRWNSCPLGLHADGMCSCESSPMAEESSTRASISRIVMLAEALFEVLDEIHRQPGSLSLSMVSLPAPESIVDSFPLKSHKKVDVADGGNDSEQCYICLAEYEEGDQIRVLPCFHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSAHSEMQSH | 535 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu6g0925 | 535 | MobiDBLite | consensus disorder prediction | 127 | 147 | - | - | |
Ssu6g0925 | 535 | PANTHER | RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED | 1 | 533 | - | - | |
Ssu6g0925 | 535 | Pfam | Ring finger domain | 473 | 516 | IPR001841 | - | |
Ssu6g0925 | 535 | ProSiteProfiles | Zinc finger RING-type profile. | 474 | 516 | IPR001841 | - | |
Ssu6g0925 | 535 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 440 | 520 | IPR013083 | - | |
Ssu6g0925 | 535 | SUPERFAMILY | RING/U-box | 468 | 519 | - | - | |
Ssu6g0925 | 535 | MobiDBLite | consensus disorder prediction | 129 | 147 | - | - | |
Ssu6g0925 | 535 | MobiDBLite | consensus disorder prediction | 31 | 50 | - | - | |
Ssu6g0925 | 535 | PANTHER | RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED | 1 | 533 | - | - | |
Ssu6g0925 | 535 | MobiDBLite | consensus disorder prediction | 166 | 202 | - | - | |
Ssu6g0925 | 535 | MobiDBLite | consensus disorder prediction | 61 | 109 | - | - | |
Ssu6g0925 | 535 | MobiDBLite | consensus disorder prediction | 172 | 202 | - | - | |
Ssu6g0925 | 535 | SMART | ring_2 | 474 | 515 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu6g0925 | Ssu-Chr6 | 14954457 | 14958762 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu6g0925 | 344 | 520 | C3H Transcription Factor Family | AT5G45290 | 46.392 | 2.09e-41 | 154 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu6g0925 | - | - | gmx:100783604 | 915.605 |