Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0925 ATGGGTTCGGCCTCTAGTCTACTTGGGTCTCGCCCCTCTAGTCCCAGGGTCAACCGTTTCAGACTATCGTCTCTTCTATGTGGCACCTCCACCTCTCGCTCCATTCATCAGATGGAAGAACATTCATCTGAACTTCAGGTTGATTCAGCGAGAGATTTTGATGGTGAAATTCAGAAAGTCACTGAGGAATCATCTTTATCATATACAGAAGCTAGAATCAGCTGCAGTCCCCATGCTGAATCTGCAACCTCATCTGATAGGAGAACTGATTTCTCTGGGAATACTAGTGTTGAATGTTCTTCTAGAAACGTTGCAACAAATAGTCAGAGGAACTGCTTGTCTGAACATGAGGAGCTAGCCCCTCTTTATCAGGTAAGTGCTGGTCATAGTGGTCATGAATCATATAGTGATAGTAGCAACGCTGCTAGTACTTCATTTGTAGAACAGCAGTCTTCAGCTCCAGTCTCTGTAAATGTTTCTGCTAACAAGGATGTAGTCAATGATGTTAATGATCCAGTGGATAGTGGTGTCTCTCAAGTCTCTCATGAAATGCGTCCAAGAGGTTCAACCCCTCAAGAGCATGGGAATTTCGGTTCTGGTGAAATTTCTCTTGAGAATCACACTAGTGCATTCATATCTGTCCAGAATTCTTCCCACCCTGTTGCTCAAGTTTCCAACTTAGCAGCAACTCCTCAAGTGCCAGAAGATGAACCTCGTCGCGAGACAATTCCTTCAGGTTTAGGTATTCTTGTGTCCAATCGGGAAAGAGGGCCAGGAAATGATAGTGTGCTTCAAGTTGATGTGGTCGCAATATCTTCCAATGTTTTGTCTGGAAGCAATGCTGATGCCAATGATCATGATGCCAGAAGGAATGGTAGAAGATTATTTTGGGATGCTTTTTCACAACGCAGTTCTAGAAGGCTTGGTGATTCTCCAACCATTGTCTTCTCTGCTGGAGGTGCTGATGATCCTGGATCTCATGATCGATGGCTAGTTGATTTTAGTGGGGATTTGTCAAATGATGGGGTTGGAGGTGCTACTGGGTATATGGGCAGTAGAATTCACAGATTGAATGAACGAAGAATGCGGCACTCAAGATCTGAGaTCTGGGAAAGGCTTCGTGGAGGCTTTGATGAGATTGGTCGGTGGAATTCATGTCCATTAGGACTCCATGCAGATGGCATGTGCTCATGTGAGTCTTCCCCAATGGCTGAGGAATCTAGTACTCGAGCAAGTATTTCAAGAATAGTCATGCTGGCTGAGGCTTTGTTTGAGGTTTTAGACGAAATCCATCGACAACCTGGATCGCTGTCTCTATCCATGGTCTCACTGCCTGCACCTGAATCAATTGTTGATTCCTTCCCTCTGAAATCTCACAAAAAGGTTGATGTGGCTGATGGAGGCAATGATTCTGAACAATGTTACATATGTCTGGCGGAGTATGAAGAAGGGGACCAAATACGAGTTCTTCCTTGCTTCCACGAGTATCACATGTCATGTGTCGATAAGTGGCTTAAAGAAATACATGGTGTATGTCCTCTGTGTCGTGGCAATGTCTGTGGAGGGTTCACAGAGTCTTCTGCCCACTCAGAAATGCAGTCTCATTGA 1608 0.4478 MGSASSLLGSRPSSPRVNRFRLSSLLCGTSTSRSIHQMEEHSSELQVDSARDFDGEIQKVTEESSLSYTEARISCSPHAESATSSDRRTDFSGNTSVECSSRNVATNSQRNCLSEHEELAPLYQVSAGHSGHESYSDSSNAASTSFVEQQSSAPVSVNVSANKDVVNDVNDPVDSGVSQVSHEMRPRGSTPQEHGNFGSGEISLENHTSAFISVQNSSHPVAQVSNLAATPQVPEDEPRRETIPSGLGILVSNRERGPGNDSVLQVDVVAISSNVLSGSNADANDHDARRNGRRLFWDAFSQRSSRRLGDSPTIVFSAGGADDPGSHDRWLVDFSGDLSNDGVGGATGYMGSRIHRLNERRMRHSRSEIWERLRGGFDEIGRWNSCPLGLHADGMCSCESSPMAEESSTRASISRIVMLAEALFEVLDEIHRQPGSLSLSMVSLPAPESIVDSFPLKSHKKVDVADGGNDSEQCYICLAEYEEGDQIRVLPCFHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSAHSEMQSH 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0925 535 MobiDBLite consensus disorder prediction 127 147 - -
Ssu6g0925 535 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 533 - -
Ssu6g0925 535 Pfam Ring finger domain 473 516 IPR001841 -
Ssu6g0925 535 ProSiteProfiles Zinc finger RING-type profile. 474 516 IPR001841 -
Ssu6g0925 535 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 440 520 IPR013083 -
Ssu6g0925 535 SUPERFAMILY RING/U-box 468 519 - -
Ssu6g0925 535 MobiDBLite consensus disorder prediction 129 147 - -
Ssu6g0925 535 MobiDBLite consensus disorder prediction 31 50 - -
Ssu6g0925 535 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 533 - -
Ssu6g0925 535 MobiDBLite consensus disorder prediction 166 202 - -
Ssu6g0925 535 MobiDBLite consensus disorder prediction 61 109 - -
Ssu6g0925 535 MobiDBLite consensus disorder prediction 172 202 - -
Ssu6g0925 535 SMART ring_2 474 515 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0925 Ssu-Chr6 14954457 14958762 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0925 344 520 C3H Transcription Factor Family AT5G45290 46.392 2.09e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0925 - - gmx:100783604 915.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0925 6 14954457 14958762 Ssu6g0925 6 14954457 14958762 ECH