Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0919 ATGGCTTTCCACAACCATCTCCAGCACGAGATAGCCTTCCAGCGTTTCACGGAGGAGCAAGagttaaatgaaaatagagacATGCAACAGAGGCTGCCACCGACATGGCTCAACAACGTTAGCGCCGCGCATCAGCGTCAACAGAATTTCCTCGACACCACCGAGAAAAACGTGGATCGGAACCGAACCGAAAGCAATTGCGAATCCGAGGATTTAAGGGAATACAAAGCGGACATTCTAGGACACCCTCTCTACGATCAACTGTTATCGGCACATGTCTCGTGCCTGAGGATTGCCACACCCGTGGACCAGCTTCCTAGGATCGACGCGCAGCTTCAGCAGTCGCAGCGCGTGGTTGAGAAGTACTCTGCACTTGGAAATAACGGGGTGGTGGATGAGAAGGAGCTTGATCAGTTCatgACCCATTATGTTCTGTTGCTCTGTGCCTTTAAAGAACAATTGCAACAGCATGTCCGTGTTCATGCCATGGAGGCAGTGATGGCTTGTTGGGATCTGGAGCAGTCTCTGCAAAGCTTGACAGGTGTATCTCCTGGTGAAGGGACGGGTGCAACAATGTCAGACGATGAAGATGACCAGGCAGAGAGCAATGCCAACTTATACGAAGGCAGCCTGGATGGCGCTGAAACTCTTGGCTTTGGTCCTCTTGTCCCCACTGAGAGTGAAAGATCTTTGATGGAGCGAGTGAGGCATGAATTGAAACATGAACTAAAACaggGTTATAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTACGAAAGAGACGAGCGGGGAAGCTCCCAGGGGACACCACATCCCTTTTGAAAGCTTGGTGGCAAGCACATTCTAAATGGCCCTACCCCACTGAGGAAGACAAGGCCAGATTGGTGCAGGAAACAGGCTTGCAATTAAAGCAGATAAATAATTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACTAGCAACCCCTCGTCCTCTAGTAACTCCAAAAGCAAGCGCAAGAGTGCAGGAGAAGCCAGTAACCAGAGCTTCATGTGA 1041 0.4851 MAFHNHLQHEIAFQRFTEEQELNENRDMQQRLPPTWLNNVSAAHQRQQNFLDTTEKNVDRNRTESNCESEDLREYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSALGNNGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDDQAESNANLYEGSLDGAETLGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTSNPSSSSNSKSKRKSAGEASNQSFM 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0919 346 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 22 340 - -
Ssu6g0919 346 SMART KNOX2_2 126 181 IPR005541 GO:0003677|GO:0005634
Ssu6g0919 346 MobiDBLite consensus disorder prediction 180 201 - -
Ssu6g0919 346 ProSiteProfiles ELK domain profile. 238 258 IPR005539 GO:0003677
Ssu6g0919 346 Pfam KNOX2 domain 131 180 IPR005541 GO:0003677|GO:0005634
Ssu6g0919 346 Gene3D - 259 320 - -
Ssu6g0919 346 CDD homeodomain 261 321 IPR001356 GO:0003677
Ssu6g0919 346 Pfam ELK domain 238 259 IPR005539 GO:0003677
Ssu6g0919 346 SMART ELK_2 238 259 IPR005539 GO:0003677
Ssu6g0919 346 SMART HOX_1 260 325 IPR001356 GO:0003677
Ssu6g0919 346 SUPERFAMILY Homeodomain-like 260 324 IPR009057 -
Ssu6g0919 346 MobiDBLite consensus disorder prediction 315 346 - -
Ssu6g0919 346 Pfam Homeobox KN domain 278 317 IPR008422 GO:0003677|GO:0006355
Ssu6g0919 346 ProSiteProfiles 'Homeobox' domain profile. 258 321 IPR001356 GO:0003677
Ssu6g0919 346 Pfam KNOX1 domain 75 116 IPR005540 GO:0003677|GO:0005634
Ssu6g0919 346 SMART KNOX1_2 73 117 IPR005540 GO:0003677|GO:0005634
Ssu6g0919 346 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 22 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0919 Ssu-Chr6 14878602 14887791 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0919 75 335 Homeobox Transcription Factor Family AT5G25220 84.848 8.34e-164 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Ssu6g0919 KNOX2 3.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0919 - - gmx:100803673 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0919 6 14878602 14887791 Ssu6g0919 6 14878602 14887791 ECH
Ssu6g0919 6 14878602 14887791 Ssu1g1787 1 44652620 44658288 PCT