Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0911 ATGCCGGACGGCGAATCCTCCGCCGTTGCCGGCGGCGAACCGTCCATGGATTCTTCTTTAAGCCTTTCCGATCAACTTCAGTCGCTTAGTCTTTCCCAAGTCAAAAATCATGATGACTCGGTCAAGAAAGATCCCAGGAAAATTGCAAGAAAGTACCAATTGGAGCTGTGCAAAAAAGCTatggaagaaaatataattgtgtattTGGGGACAGGGTGTGGGAAGACCCACATTGCTGTGCTTCTTATGCATGAGATGGGTCATTTGATACAGAAACCGCAGAAGAACATATGTGTCTTTCTTGCCCCTACTGTGGCTTTAGTTCATCAGcAAGCAAAGGTTATAGCAGACTCTACTGATTTTAAGGTCGGGATTTACTGCGGGAGTTCCAAGCGCTTGAAACATCATCAAGACTGGGAGCAGGAGATTGTACAATATGAGGTTCTTGTTATGACCCCACAAATATTACTTCACAACTTATCTCATTGTTTCATCAAAATGGAGATGattgcacttttgatatttGACGAATGCCATCATGCTCAAGTCAAAAGCAACCATGCTTATGCAGTAATCATGAAAGTCTTCTACAAAAGTAATTCCACAAAGGTTCCCCGTATATTCGGCATGACTGCTTCCCCTGTTGTAGGAAAAGGCACTGCTAGTGAAGCAAATCTAGCAAAAAGCATCAATAGTCTTGAATGTATGCTTGATGCTAAGGTATACTCTGTTGAAGACAAGGAATTGCAATCTTTTGTGACCTCTCCTgttgttaatatatatcattatggTTCAACTGCAAGGGGGGAAACTAGCTTGTTCTCAGAAATCGAGGAGATTAAACACCAGtgCATAGCAACCCTTGGTAGGAGTATAAAAGATCACCAGAAACGTATGAACACAAAGAAACTTCTGAACCGGATGCATGATAATGTGGTTTTCTGTCTGGGGAATCTTGGCATTTGGGGAGCATTGCAGGCTAGTCGTATTCTTCTGAGTGGTGATTGTTCTGAGAGGCATGAATTAGTGGAGGCAGAAGGAAATTCAAGTGATGACTCTGTGTGTGACAAATATCTTGCTCAGGCTGCTGAACTATTTACTACATCACAATGCTTCATAGGTGACAGTGTATCTGATTTATCTTCTGTGGAAATATTAAAAGAGCCATTTTTCTCAGCAAAGCTTTTATGCCTCATTGGGATACTGTCCAACTTTAGGTTGCAAAAGAACATGAAGtgtataatttttgtgaatAGAATTGTGACTGCAAGATCCCTGTCATACATACTACAGAAGCTCAAGCTTCTAAGACAATGGAGGAGTGATTTTCTTGTAGGAGTCCATGCTGGACTGAAGAGTATGTCACGAAAGACCATGAACATCATTGTTGAGAAGTTTCGTTCTGGAGAGTTGAATCTATTGGTTGCAACCAAAGTGGGTGAAGAAGGACTTGACATTCAGACGTGTTGCCTTGTCATACGATTTGATCTTCCAGAAACTGTTGCCAGTTTTATACAGTCAAGAGGCCGTGCACGTATGCCTCAGTCAGAATATGCATTTTTGGTGGACAGAGGCAATAGGAAGGAACTAGACATAATTGATGGTTTTAAGAAAGATGAATGCCGAATGAATGTGGAAATTAATGTTCGAACATCCAATGAGACATACATCATCCCTGAGGAAAGAATATTCAGAGTTGATTCGACCGGTGCTTCTGTTAGTTCTGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACATGATGAGTACTTTGACCCCAAGCCAAACTTCTATTACTTAGATGATTCGGAGGGAATTGTCTGCAACATAACATTGCCTTCCAATGCACCAATACACCAAATTTTGGGGGCACCACAGTTGTCTATGGAGGCTTCCAAAAGGGATGCTTGCCTAAAAGCAATAGAAGAACTTTATAAATTAGGTGCTTTAAATGATTGTCTCTTGCCAAAGCAGGATGGTGCAGAGCAAGAGGAGCAGGTTTCAGTCTcttctgatgaagatgaagATGCCATATCAAGAGGAGAATTACATCAGATGCTAGTTCCTTCTGCCTTGGGACAGTCATGGATAAGCAAGGATAAAATCGTCTGTCTCAACTCTTACTACATAAAATTTTGTCCCTTTCCAGAGGATAGGGTCTACAAAGAGTATGGTCTATTCATCATGGCTAGTCTTCCAGTGGAGGCTGAGAAATTGGAACTTGATCTCCATCTTGCTCATGGTCGGTCTGTGATGACAAAATTTGTCCCATTTGGGGTTGTAGAATTTGACAAAGATGAgATTAAGATGGCAGAGAATTTTCAAGAAATGTTCCTCAAAATTATTCTTGATAGATTAGAATTTGTTTCCGAGTCTGTAGACTTGGGTAAGGGTTCTGAATCTCACACAAGCGCATCAACCTTCTACCTTTTGCTTCCAGTTGCATTGCAAGAATATGGAAATGCCATGAAAGTAGATTGGAAGACAGTGAAGAGATGCCTTTGTTCACCAATTTTCAGGCATCCAGCTGATACTATGGATAAAAAAGTTTTCCCTTTAGATAATCACCTGCAACTTGCCAATGGTTGCAGAAGTGTAAAAGATGTCAAGAATAGTTTAGTGTATGCCCCACATAAGAAGATCTTTTATTTTGTCACGAATATTAACTATCAAAAGAATGGATTTAGTCCTCATAAAGATTCAGGCACCTCAAGTTATGTGGATCACTTCATTGAAAAGTTTTCCATTCACCTCAAATACCCAGAACAACCACTTCTGCATGTAAAACCACTCTCCAATTTGCACAACCTGCTACACAACCGAAAGCATGAGGATGCAGAACCACATGAGCTGGAGgaatacttaatttatttgcCTCCTGAGCTATGTGAACTGAAAATAATAGGCTTTTCAAAGGATATTGGCAGTTCCATATCTTTGCTACCCTCAATTATGCATCGTCTTGGAAACTTGCTGGTGGCTATTGAACTCAAGCAGATGCTATCTTCTTTCTTTCCAGAGGCAGCTGAAATTAGTGCCCTTAGAGTTCTAGAGGCTCTCACTACTGAGAAATGTCAGGAGCGCTTTTCCCTTGAAAGACTTGAAGTGCTTGGTGATGCTTTCCTTAAATTTGCTGTTGcatgtcatttttttctcatgcaTGACAGCCTTCATGAAGGAGACCTTACAAAAAGGCGTTCTAATGCTGTAAATAATTCCAATTTGTTTAAGTTGGCTATTAAGCGCAATTTGCAGGTCTATATATGCGATCAGACATTTGATCCCTCTCAGTTTTATACATTAGGCCGTCCTTGCCCAAGAGTTTGTAGCAAGGAAACCGAAGAAAGCATacacttatatttaaattctgTTAAGGAGCAAGGAGGAGCAACTGAAACCCGATGTAACAAAAATCATCATTGGTTACATAGGAAAACCATTGCTGATGTGGTTGAAGCTCTGGTTGGAGCATTCCTAGTTGACAGTGGCTTTAAAGCTGCAATTGCCTTTCTTACATGGATTGGCATACAAGTTGACTTTGAAGCTTCACAAGTAGTTAATATTTGCAGAGCAAGTGCTGGCTATTTCCCTCTTTCTTCTGATGTAGACATTCCTTCTCTTGAAAGTAAGCTAGGACATCACTTTGTTCATAAGGGTCTGCTTCTCCAGGCATTTGTACATCCTTCTTACAATAAGCTTGGAGGAGGCTGTTATCAGCGATTGGAGTTTCTTGGAGATGCTGTCTTGGATTATTTGATTACTTCATATCTATTCTCAGCTTATCCGAAACTAAAGCCCGGTCAATTGACAGATTTGAGATCATTGTCTGTTAACAATAAGGCATTTGCCTGTGTAGCAGTAGATCGCAGTTTTGATAAATTTCTCTTATGTGATTCAAATAGCCTGTCTGAGGCAATAAAAAAGTATGTGGACTATGTTAGAAGGCCTGTATCAGATAGCGATGTTAAAGACGGGCCAAAATGTCCCAAGGCACTAGGTGACTTAGTCGAATCTTGTGTTGGTGCCATCCTTCTTGATTCGGGGTTCAATTTGAACAAAGTTTGGAAGATTATGACTTCGTTCTTGGACCCAATCATGAAATTCTCGTCAAGCTTGCAGCTCAGTCCTGTTAGGGATTTGCGAGAACTTTGCCAATCTCATAATTTGGAGTTGGAGTTTCTGCCAGTGCCATCAAAACTGACTAAAACATTTTCAGTTGAAGCTAAAGTTAGTGGGAATGGTGTATATGAAACAGAGCCAGCAACTGGCCAAAATAAAAAGGAGGCTTCTAGAATTGCCTCACAGCTACTTTTTTCAAAGCTCAAGGCTCAAGGCTGGAAAGCAAGGTCAAAGACTTTGGAAGAAGTTCTGGAATCAACTTCTAAGATGGAACCAAAACTTATTGGCTATGATGAAACTCCCATTGATGTAACAGATACCAATACTGCCGGGCACATAGTGGTTAATGCAGACCTGTACAACATGTCTAACCCAGAAATTCGCCCTATCCAAGAGAGAGATGAAATATGCTCTCCATGTGTGAAACCTGTTGGCCAGCGGCTTCCATCTTCTGCTAAGGGAAAGCTTagtcaaatatttgaaaatcgTGATCGTGGCGGTGACTCGTCAGGGACAGGAACGGCAAGATCACGATTGTATGAATTCTGTGCTGCTTATTGCTGGAAACCTCCTTCTTTTGAATGCTGCAAGGAAGAGGGACCAGACCACATGAAACAATTCACTTACAAGGTGACCTTGGAGATAGAAGAGGCCCCAGATATGATTTTAGAGTTTGTTGGGGAACCtcagttaaaaaagaaagatgcaGCAGAGAGTGCAGCTGAGGGTGCATTTTGGTACCTGCAACGGGAAGGTTATCTGCATAGTGGTAATTGA 4908 0.3981 MPDGESSAVAGGEPSMDSSLSLSDQLQSLSLSQVKNHDDSVKKDPRKIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLMHEMGHLIQKPQKNICVFLAPTVALVHQQAKVIADSTDFKVGIYCGSSKRLKHHQDWEQEIVQYEVLVMTPQILLHNLSHCFIKMEMIALLIFDECHHAQVKSNHAYAVIMKVFYKSNSTKVPRIFGMTASPVVGKGTASEANLAKSINSLECMLDAKVYSVEDKELQSFVTSPVVNIYHYGSTARGETSLFSEIEEIKHQCIATLGRSIKDHQKRMNTKKLLNRMHDNVVFCLGNLGIWGALQASRILLSGDCSERHELVEAEGNSSDDSVCDKYLAQAAELFTTSQCFIGDSVSDLSSVEILKEPFFSAKLLCLIGILSNFRLQKNMKCIIFVNRIVTARSLSYILQKLKLLRQWRSDFLVGVHAGLKSMSRKTMNIIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDRGNRKELDIIDGFKKDECRMNVEINVRTSNETYIIPEERIFRVDSTGASVSSGYSISLLHQYCSKLPHDEYFDPKPNFYYLDDSEGIVCNITLPSNAPIHQILGAPQLSMEASKRDACLKAIEELYKLGALNDCLLPKQDGAEQEEQVSVSSDEDEDAISRGELHQMLVPSALGQSWISKDKIVCLNSYYIKFCPFPEDRVYKEYGLFIMASLPVEAEKLELDLHLAHGRSVMTKFVPFGVVEFDKDEIKMAENFQEMFLKIILDRLEFVSESVDLGKGSESHTSASTFYLLLPVALQEYGNAMKVDWKTVKRCLCSPIFRHPADTMDKKVFPLDNHLQLANGCRSVKDVKNSLVYAPHKKIFYFVTNINYQKNGFSPHKDSGTSSYVDHFIEKFSIHLKYPEQPLLHVKPLSNLHNLLHNRKHEDAEPHELEEYLIYLPPELCELKIIGFSKDIGSSISLLPSIMHRLGNLLVAIELKQMLSSFFPEAAEISALRVLEALTTEKCQERFSLERLEVLGDAFLKFAVACHFFLMHDSLHEGDLTKRRSNAVNNSNLFKLAIKRNLQVYICDQTFDPSQFYTLGRPCPRVCSKETEESIHLYLNSVKEQGGATETRCNKNHHWLHRKTIADVVEALVGAFLVDSGFKAAIAFLTWIGIQVDFEASQVVNICRASAGYFPLSSDVDIPSLESKLGHHFVHKGLLLQAFVHPSYNKLGGGCYQRLEFLGDAVLDYLITSYLFSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRSFDKFLLCDSNSLSEAIKKYVDYVRRPVSDSDVKDGPKCPKALGDLVESCVGAILLDSGFNLNKVWKIMTSFLDPIMKFSSSLQLSPVRDLRELCQSHNLELEFLPVPSKLTKTFSVEAKVSGNGVYETEPATGQNKKEASRIASQLLFSKLKAQGWKARSKTLEEVLESTSKMEPKLIGYDETPIDVTDTNTAGHIVVNADLYNMSNPEIRPIQERDEICSPCVKPVGQRLPSSAKGKLSQIFENRDRGGDSSGTGTARSRLYEFCAAYCWKPPSFECCKEEGPDHMKQFTYKVTLEIEEAPDMILEFVGEPQLKKKDAAESAAEGAFWYLQREGYLHSGN 1635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0911 1635 SUPERFAMILY dsRNA-binding domain-like 1334 1446 - -
Ssu6g0911 1635 Gene3D Dicer dimerisation domain 574 670 IPR038248 -
Ssu6g0911 1635 Pfam Ribonuclease III domain 1243 1352 IPR000999 GO:0004525|GO:0006396
Ssu6g0911 1635 Pfam Ribonuclease III domain 1036 1167 IPR000999 GO:0004525|GO:0006396
Ssu6g0911 1635 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1551 1627 IPR014720 -
Ssu6g0911 1635 SUPERFAMILY PAZ domain 853 969 IPR036085 GO:0005515
Ssu6g0911 1635 Gene3D - 1558 1627 - -
Ssu6g0911 1635 SMART PAZ_2_a_3 849 997 IPR003100 GO:0005515
Ssu6g0911 1635 Gene3D paz domain 865 969 - -
Ssu6g0911 1635 SUPERFAMILY RNase III domain-like 1020 1181 IPR036389 GO:0004525|GO:0006396
Ssu6g0911 1635 CDD DSRM_DCL_plant 1558 1627 - -
Ssu6g0911 1635 Gene3D Ribonuclease III domain 1016 1178 IPR036389 GO:0004525|GO:0006396
Ssu6g0911 1635 ProSiteProfiles Ribonuclease III family domain profile. 1208 1352 IPR000999 GO:0004525|GO:0006396
Ssu6g0911 1635 PANTHER DICER-RELATED 45 1629 - -
Ssu6g0911 1635 CDD DEXHc_dicer 47 246 - -
Ssu6g0911 1635 MobiDBLite consensus disorder prediction 1 22 - -
Ssu6g0911 1635 CDD RIBOc 1021 1177 IPR000999 GO:0004525|GO:0006396
Ssu6g0911 1635 Gene3D - 47 284 IPR027417 -
Ssu6g0911 1635 Pfam DEAD/DEAH box helicase 51 212 IPR011545 GO:0003676|GO:0005524
Ssu6g0911 1635 SMART ultradead3 45 250 IPR014001 -
Ssu6g0911 1635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 529 IPR027417 -
Ssu6g0911 1635 ProSiteProfiles Ribonuclease III family domain profile. 1022 1167 IPR000999 GO:0004525|GO:0006396
Ssu6g0911 1635 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 578 668 IPR005034 GO:0016891
Ssu6g0911 1635 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 394 553 IPR001650 -
Ssu6g0911 1635 CDD DSRM_EIF2AK2-like 1378 1445 - -
Ssu6g0911 1635 SMART DRBM_3 1380 1446 IPR014720 -
Ssu6g0911 1635 SMART DRBM_3 1552 1626 IPR014720 -
Ssu6g0911 1635 CDD RIBOc 1224 1374 IPR000999 GO:0004525|GO:0006396
Ssu6g0911 1635 SUPERFAMILY RNase III domain-like 1207 1371 IPR036389 GO:0004525|GO:0006396
Ssu6g0911 1635 Pfam PAZ domain 871 992 IPR003100 GO:0005515
Ssu6g0911 1635 Pfam Helicase conserved C-terminal domain 399 512 IPR001650 -
Ssu6g0911 1635 ProSitePatterns Ribonuclease III family signature. 1243 1251 IPR000999 GO:0004525|GO:0006396
Ssu6g0911 1635 SUPERFAMILY dsRNA-binding domain-like 1551 1630 - -
Ssu6g0911 1635 Gene3D - 387 548 IPR027417 -
Ssu6g0911 1635 SMART helicmild6 424 514 IPR001650 -
Ssu6g0911 1635 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1552 1626 - -
Ssu6g0911 1635 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1379 1447 IPR014720 -
Ssu6g0911 1635 Pfam Dicer dimerisation domain 578 662 - -
Ssu6g0911 1635 SMART riboneu5 1223 1375 IPR000999 GO:0004525|GO:0006396
Ssu6g0911 1635 SMART riboneu5 1020 1187 IPR000999 GO:0004525|GO:0006396
Ssu6g0911 1635 Gene3D Ribonuclease III domain 1206 1376 IPR036389 GO:0004525|GO:0006396
Ssu6g0911 1635 PANTHER DICER-LIKE PROTEIN 4 45 1629 - -
Ssu6g0911 1635 Gene3D - 1377 1456 - -
Ssu6g0911 1635 ProSiteProfiles PAZ domain profile. 871 971 IPR003100 GO:0005515
Ssu6g0911 1635 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 232 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0911 Ssu-Chr6 14738561 14757670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0911 412 511 Eukaryotic Initiation Factors Gene Family AT1G72730 32.000 3.02e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0911 K11592 - gmx:100818702 2882.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0911 6 14738561 14757670 Ssu6g0911 6 14738561 14757670 ECH