Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0909 ATGTCAGGGTGGGACGAAGGAGCCGTCTACTACAGCGACCAAGCGCTCGCCGGGGACGACGGTGGCGGCGCCCGCGGTGAAGCCGGCACCGATTCGAACCACTCCCTCCTCCAGAAATTCAAGGAATTCATCCGAAACTTCGAGACCGCCAACAACGTCTTCCCTTACAGAGAGAGCCTCCTCCACAACCCTAAGTACCTTCTCGTCGACATGGGAGATCTAGAGACCTTCGACTCCGACCTTCCCGCTAAACTCCGCTCTTCCCCCGCTGATTTCTTGCCCCTGttcGAAACGGCGGCAGCACAGGTTCTCGTGAGTTTGAAGACGAAGGTGGCTGGGGATGCCGGAGTCATGGAGGATCCTGTGCTCGGTGATGTTCAGATTTTGCTCACCTCCAAAGAGGATCCTGTGTCGATGAGATCGCTCGGGGCTCAATACATATCGAAGCTTGTTAAAATTGCAGGGATTACTATTGCTGCATCCAGGACCAAGGCAAAGGCTACTTATGTTACCCTGATATGCAAGAATTGTAAGAAGGGAAAACAGGTTCCGTGTCGGCCGGGACTCGGAGGAGCAATTGTTCCTCGATCTTGTGATCATGTTCCTCAGCCTGGAGAAGAACCTTGCCCAATTGATCCTTGGCTCATTGTGCCTGACAAGAGCAAGTATGTTGATCAACAAACCTTGAAGTTGCAAGAAAATCCGGAGGATGTTCCAACCGGAGAGCTTCCAAGAAACCTGCTCCTCTCTGTTGATCGGCATCTAGTTCAGACAGTAGTACCTGGCTCAAGATTGACAATCATGGGAATTTATAGTGTCTACCAGGCTTCTAGCTCTTCTTCATCCCACAAAGGAGCAGTTGCAGTTAGACAGCCTTATATTAGGGTTGTAGGAATAGAAGAAACAAATGAGACCAAGTCTCGAGGTCCGGCTGCATTTACACAAGATGAGATAgaagaattcaaaaaatttgCTGCTGAACCTGatgcatataaaaatatctGTTCCAAGATTGCTCCGTCTATATTTGGGCATGATGATGTCAAAAAGGCTGTAGCCTGTCTTCTATTTGGGGGGTCAAGAAAGAATTTGCCTGATGGTGTCAGGTTAAGAGGTGATATCAATGTATTGCTTCTGGGGGATCCATCTACAGCAAAGTCACAGTTTTTGAAGTTCGTTGAAAAGACTGCTCCTGTTGCTGTTTATACTTCTGGAAAAGGCTCATCAGCTGCTGGTCTCACAGCTTCTGTAATTCGAGATAGCAGCACGCGTGAATTTTATCTTGAAGGAGGAGCCATGGTCTTGGCTGATGGAGGTGTTGTCTGCATAGATGAGTTTGATAAGATGAGGCCAGAAGATAGGGTTGCCATTCATGAGGCCATGGAACAGCAAACTATATCCATAGCCAAAGCTGGAATAACAACTGTTCTTAATTCAAGGACTTCAGTTCTTGCTGCTGCCAACCCCCCATCAGGACGTTATGATGATCTTAAGACAGCACAGGATAACATTGATTTGCAGACCACTATTCTCTCTAggtttgatttaattttcattgtGAAAGACGTCAGAATGTATAGTCAAGATAAGATAATAGCTAATCATGTCATAAAGGTCCATGCATCTGCCGGTGCAACAATGGGTGAGAGCAGAACTTCTAAAGAAGAGAATTGGCTGAAGAGGTATTTACAATATTGTCGAGCTGAATGCCACCCTCGTCTATCAGAATCTGCAGCAACATTATTGCAGAATCATTATGTGAAAATCAGACAGgATATGAGGCAACAAGCAAATGAAACTGGAGAAGCTGCAGCAATACCAATTACTGTAAGGCAGCTGGAAGCTATTGTTAGGTTGAGCGAGGCACTTGCAAAGATGAAACTATCTCATCTTGCTACTGAGGAGAATGTGCAAGAAGCAGTAAGGCTTTTCACCGTGTCCACGATGGATGCAGCTAAGTCGGGAATAAACCAACAAATAAATCTTACACCTGATATGGCAAATGAGATAAAGCAAGCTGAAACTCAGATAAAGAGAAGAATTGGGATTGGAAACCACGTATCAGAAAGAAGGCTGATTGATGACCTCAGCAGAATGGGGATGAATGAATCTATTGTGAGAAGAGCTCTTATAATCATGCACCAGAGAGATGAAATAGAGTACAAGAGAGAAAGGCGTGTTGTATTTAGGAAAGCATGA 2199 0.4479 MSGWDEGAVYYSDQALAGDDGGGARGEAGTDSNHSLLQKFKEFIRNFETANNVFPYRESLLHNPKYLLVDMGDLETFDSDLPAKLRSSPADFLPLFETAAAQVLVSLKTKVAGDAGVMEDPVLGDVQILLTSKEDPVSMRSLGAQYISKLVKIAGITIAASRTKAKATYVTLICKNCKKGKQVPCRPGLGGAIVPRSCDHVPQPGEEPCPIDPWLIVPDKSKYVDQQTLKLQENPEDVPTGELPRNLLLSVDRHLVQTVVPGSRLTIMGIYSVYQASSSSSSHKGAVAVRQPYIRVVGIEETNETKSRGPAAFTQDEIEEFKKFAAEPDAYKNICSKIAPSIFGHDDVKKAVACLLFGGSRKNLPDGVRLRGDINVLLLGDPSTAKSQFLKFVEKTAPVAVYTSGKGSSAAGLTASVIRDSSTREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDVRMYSQDKIIANHVIKVHASAGATMGESRTSKEENWLKRYLQYCRAECHPRLSESAATLLQNHYVKIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHLATEENVQEAVRLFTVSTMDAAKSGINQQINLTPDMANEIKQAETQIKRRIGIGNHVSERRLIDDLSRMGMNESIVRRALIIMHQRDEIEYKRERRVVFRKA 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0909 732 ProSitePatterns MCM family signature. 439 447 IPR018525 GO:0003677|GO:0005524|GO:0006260
Ssu6g0909 732 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 642 659 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Ssu6g0909 732 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 166 178 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Ssu6g0909 732 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 566 581 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Ssu6g0909 732 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 290 302 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Ssu6g0909 732 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 140 155 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Ssu6g0909 732 Gene3D - 32 116 - -
Ssu6g0909 732 Gene3D - 311 666 IPR027417 -
Ssu6g0909 732 Pfam MCM P-loop domain 318 540 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu6g0909 732 Pfam MCM AAA-lid domain 558 647 IPR041562 -
Ssu6g0909 732 ProSiteProfiles MCM family domain profile. 330 536 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu6g0909 732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 340 648 IPR027417 -
Ssu6g0909 732 Gene3D - 139 274 IPR012340 -
Ssu6g0909 732 PANTHER DNA REPLICATION LICENSING FACTOR MCM5 60 678 - -
Ssu6g0909 732 PRINTS Mini-chromosome maintenance (MCM) protein family signature 431 445 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu6g0909 732 PRINTS Mini-chromosome maintenance (MCM) protein family signature 483 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu6g0909 732 PRINTS Mini-chromosome maintenance (MCM) protein family signature 459 472 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu6g0909 732 PRINTS Mini-chromosome maintenance (MCM) protein family signature 371 386 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu6g0909 732 PRINTS Mini-chromosome maintenance (MCM) protein family signature 510 518 IPR001208 GO:0003677|GO:0005524|GO:0032508
Ssu6g0909 732 SUPERFAMILY Nucleic acid-binding proteins 39 296 IPR012340 -
Ssu6g0909 732 CDD MCM5 333 647 - -
Ssu6g0909 732 Pfam MCM N-terminal domain 38 108 IPR027925 -
Ssu6g0909 732 Pfam MCM OB domain 139 274 IPR033762 -
Ssu6g0909 732 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 60 678 IPR031327 GO:0003677|GO:0005524|GO:0032508
Ssu6g0909 732 Gene3D - 166 224 - -
Ssu6g0909 732 SMART mcm 135 649 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0909 Ssu-Chr6 14713054 14718338 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0909 1 732 Core DNA Replication Machinery Family AT2G07690 78.415 0.0 1203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0909 K02209 - gmx:100779483 1350.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0909 6 14713054 14718338 Ssu6g0909 6 14713054 14718338 ECH