Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0908 atggCGCCTCAGAAACTAACCGATTACGAACGCAAGCGACTCGAGAACATTCGCCGCAACGATGAGATGATGGCTGCCCTCAAACTCCATTCCAAAGCCACCCAACTCTCCAACTTCAAGCGTCCAAGCGTTGGAACCAAATCCTACGACGCGAAATCGGAAAAGAAGCCCAAAATCGAAACCCCGATCGTCATCAGAGTCAGACGCTCCCTGCGAACCAGGGGCATTCCACCAGATTGCAAAGGTCTTGACGGAGATACAGTGGATTCCACCACTCCCACCAAAGCCGAACCTTCCGTCGTAAGTTTGGGCCCTCTTTCCATGGCTGATGCTCGTGAAAGCGCTCTCTCTGATAGTTCCTTCGTTGAATCACTCATTGGCATGGCCCAAAAGGAAGCCCAAGCCCCTCTTTCAATTCGAGAAAGACTAGCTAGTGTTAAAAAAGGGGAAATGGAAACTTCCCTTAGGTTGGAATCTCTGTATTTGGATCCCGACAACATTGCACGGGTCGTTCCTGGGAGGATAACCTCTGTGCGGTTTTTTCCTTCCAGTAGGGTCAAAATGATCGCGGCGGGTAACAAGTTTGGGAATGTAGGATTCTGGAATGTGGGAGAAAGTGAGGTTCATTTATACCATCCCCATCGGGCTCCCATTTCTGGGATCTTGATTCAACCACATTGCTATTCCAAGATATACACAAGTTGTTATGATGGAATTCTTCGGCTAATGGATGCTGAGAAGGAAATCTTTGATCTGGTATTTGAAAgtgatgaaaatatatatactctCTCTCAGCCAACCAATGAGGCAAACTGCCTATATTTTGGCGAGGGTTCTGGAGGTTTAACTATTTGGGATAACAGGATTGGAAAACGTTCGTCCCACTGGGTTTTGCACCAAAGTAGGATTAACACAATAGATTTCAACCGTGAAAACCCTCATATTGTAGCTACTAGTTCCTCTGATGGAACTGCCTGCACCTGGGATTTGAGATATACTGGTGGGGATAAGCTCACAGCCTTAAGGACATTTACCCACAAAAGATCTGTGCAATCTGCTTACTTCTCTCCTTCTGGATGTAGCCTGGCAACTACAAGCTTGGACAACACAATTGGTATTTACAGTGGAGTTAACTTGGAGGATGCAGCTGTTATTTCTCATTACAATCATACTGGCAGATGGCTTTCTACTTTCAGAGCGAAATGGGGTTGGGATGACTCATATCTCTTCGTTGGAAATATGAAAAGAGGAGTTGATATCGTCTCAGCAGTTCAAAGGAAAACAGTTATGACTCTAGAGAGCCCGCACATGTCTGCGATTCCATGCAGATTCGATACACACTCTTACGAAGTTGGGATGCTAGTAGGAGCTACAAGTGGAGGCCAGGTTTATATTTGGACGTCGCGCTAG 1410 0.4553 MAPQKLTDYERKRLENIRRNDEMMAALKLHSKATQLSNFKRPSVGTKSYDAKSEKKPKIETPIVIRVRRSLRTRGIPPDCKGLDGDTVDSTTPTKAEPSVVSLGPLSMADARESALSDSSFVESLIGMAQKEAQAPLSIRERLASVKKGEMETSLRLESLYLDPDNIARVVPGRITSVRFFPSSRVKMIAAGNKFGNVGFWNVGESEVHLYHPHRAPISGILIQPHCYSKIYTSCYDGILRLMDAEKEIFDLVFESDENIYTLSQPTNEANCLYFGEGSGGLTIWDNRIGKRSSHWVLHQSRINTIDFNRENPHIVATSSSDGTACTWDLRYTGGDKLTALRTFTHKRSVQSAYFSPSGCSLATTSLDNTIGIYSGVNLEDAAVISHYNHTGRWLSTFRAKWGWDDSYLFVGNMKRGVDIVSAVQRKTVMTLESPHMSAIPCRFDTHSYEVGMLVGATSGGQVYIWTSR 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0908 469 Gene3D - 166 469 IPR015943 GO:0005515
Ssu6g0908 469 MobiDBLite consensus disorder prediction 75 98 - -
Ssu6g0908 469 PANTHER WD REPEAT-CONTAINING PROTEIN 76 1 468 IPR033052 GO:0006974
Ssu6g0908 469 SMART WD40_4 337 375 IPR001680 GO:0005515
Ssu6g0908 469 SMART WD40_4 164 202 IPR001680 GO:0005515
Ssu6g0908 469 SMART WD40_4 289 329 IPR001680 GO:0005515
Ssu6g0908 469 SMART WD40_4 204 244 IPR001680 GO:0005515
Ssu6g0908 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 296 331 IPR001680 GO:0005515
Ssu6g0908 469 PANTHER UNCHARACTERIZED 1 468 - -
Ssu6g0908 469 ProSitePatterns Trp-Asp (WD) repeats signature. 316 330 IPR019775 -
Ssu6g0908 469 SUPERFAMILY WD40 repeat-like 168 467 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0908 Ssu-Chr6 14708021 14710675 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0908 174 420 U-box Gene Family AT1G04510 24.904 8.21e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0908 K24755 - gmx:100800122 810.446